Detailed information NTG0334247

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EOV66_RS06300
• Genome accession: NZ_CP043033
• Coordinates: 1294658..1295650 (+)
• Length: 330 a.a.
• NCBI ID: WP_151577506.1
• Uniprot ID: -
• Organism: Escherichia coli strain XDL
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1289658..1300650

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EOV66_RS06270 (EOV66_06275)	ispD	1289719..1290429 (+)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EOV66_RS06275 (EOV66_06280)	ispF	1290429..1290908 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EOV66_RS06280 (EOV66_06285)	truD	1290905..1291954 (+)	1050	WP_000568936.1	tRNA pseudouridine(13) synthase TruD	-
EOV66_RS06285 (EOV66_06290)	surE	1291935..1292696 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EOV66_RS06290 (EOV66_06295)	pcm	1292690..1293316 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EOV66_RS06295 (EOV66_06300)	nlpD	1293501..1294595 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EOV66_RS06300 (EOV66_06305)	rpoS	1294658..1295650 (+)	993	WP_151577506.1	RNA polymerase sigma factor RpoS	Regulator
EOV66_RS06305 (EOV66_06310)	-	1295770..1296177 (-)	408	WP_001208071.1	MarR family transcriptional regulator	-
EOV66_RS06310 (EOV66_06315)	-	1296324..1296917 (+)	594	WP_000767728.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EOV66_RS06315 (EOV66_06320)	-	1296917..1298344 (+)	1428	WP_000863217.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EOV66_RS06320 (EOV66_06325)	-	1298355..1298591 (+)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EOV66_RS06325 (EOV66_06330)	pphB	1298633..1299289 (-)	657	WP_001141352.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37962.81 Da
• Isoelectric Point: 4.5597

>NTDB_id=334247 EOV66_RS06300 WP_151577506.1 1294658..1295650(+) (rpoS) [Escherichia coli strain XDL]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEESSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=334247 EOV66_RS06300 WP_151577506.1 1294658..1295650(+) (rpoS) [Escherichia coli strain XDL]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAATCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.292	97.576	0.715