Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EQH48_RS08505 | Genome accession | NZ_CP035049 |
| Coordinates | 1783737..1784117 (+) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain ABUH773 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1778737..1789117
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EQH48_RS08475 (EQH48_08475) | kdsB | 1779640..1780401 (+) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| EQH48_RS08480 (EQH48_08480) | - | 1780413..1781393 (+) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| EQH48_RS08485 (EQH48_08485) | - | 1781405..1781746 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| EQH48_RS08490 (EQH48_08490) | - | 1781764..1782537 (+) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| EQH48_RS08495 (EQH48_08495) | - | 1782575..1783183 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EQH48_RS08500 (EQH48_08500) | - | 1783193..1783747 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| EQH48_RS08505 (EQH48_08505) | xcpV | 1783737..1784117 (+) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EQH48_RS08510 (EQH48_08510) | xcpW | 1784117..1784818 (+) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EQH48_RS08515 (EQH48_08515) | gspK | 1784818..1785777 (+) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| EQH48_RS08520 (EQH48_08520) | - | 1786008..1786604 (+) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EQH48_RS08525 (EQH48_08525) | ung | 1786655..1787368 (+) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EQH48_RS08530 (EQH48_08530) | - | 1787365..1788489 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EQH48_RS08535 (EQH48_08535) | tadA | 1788496..1788999 (+) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=334219 EQH48_RS08505 WP_000836911.1 1783737..1784117(+) (xcpV) [Acinetobacter baumannii strain ABUH773]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=334219 EQH48_RS08505 WP_000836911.1 1783737..1784117(+) (xcpV) [Acinetobacter baumannii strain ABUH773]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |