Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FXN57_RS01525 Genome accession   NZ_CP043005
Coordinates   294752..295258 (-) Length   168 a.a.
NCBI ID   WP_148323473.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain PN_696     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 289752..300258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN57_RS01485 (FXN57_01480) - 289961..290245 (+) 285 Protein_289 Arm DNA-binding domain-containing protein -
  FXN57_RS01490 (FXN57_01485) - 290232..290579 (+) 348 Protein_290 hypothetical protein -
  FXN57_RS01495 (FXN57_01490) - 290673..291035 (-) 363 WP_148336955.1 hypothetical protein -
  FXN57_RS01500 (FXN57_01495) - 291038..291475 (-) 438 WP_148336953.1 Panacea domain-containing protein -
  FXN57_RS01510 (FXN57_01505) - 292658..293194 (+) 537 Protein_293 tyrosine-type recombinase/integrase -
  FXN57_RS01515 (FXN57_01510) - 293262..293525 (-) 264 WP_148363105.1 hypothetical protein -
  FXN57_RS01520 (FXN57_01515) - 293651..294496 (-) 846 WP_257797626.1 hypothetical protein -
  FXN57_RS01525 (FXN57_01520) luxS 294752..295258 (-) 507 WP_148323473.1 S-ribosylhomocysteine lyase Regulator
  FXN57_RS01530 (FXN57_01525) - 295471..295956 (-) 486 WP_148363106.1 YqaA family protein -
  FXN57_RS01535 (FXN57_01530) - 295959..296564 (-) 606 WP_148323477.1 sugar O-acetyltransferase -
  FXN57_RS01540 (FXN57_01535) - 296564..297166 (-) 603 WP_148323479.1 beta-phosphoglucomutase family hydrolase -
  FXN57_RS01545 (FXN57_01540) - 297294..297674 (+) 381 WP_148323481.1 PRD domain-containing protein -
  FXN57_RS01565 (FXN57_01560) rep 298190..300205 (-) 2016 WP_148363107.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18961.78 Da        Isoelectric Point: 6.7533

>NTDB_id=334186 FXN57_RS01525 WP_148323473.1 294752..295258(-) (luxS) [Aggregatibacter actinomycetemcomitans strain PN_696]
MPLLDSFKVDHTRMKAPAVRIAKTMRTPKGDNITVFDLRFTIPNKENLPPKGIHTLEHLFAGFMRDHLNGKDVEIIDISP
MGCRTGFYMSLIGTPNETQIAQAWAASMQDILNVKKQSKIPELNEYQCGTYTEHSLEEAHQIAQNVLDRGIGVNKNEDLT
LDESLLKK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=334186 FXN57_RS01525 WP_148323473.1 294752..295258(-) (luxS) [Aggregatibacter actinomycetemcomitans strain PN_696]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACCCGAATGAAGGCGCCTGCCGTGCGAATTGCGAAGACCATGCGCAC
TCCAAAAGGAGACAATATCACCGTTTTTGATCTTCGTTTCACGATACCTAACAAAGAAAACTTGCCACCGAAAGGTATTC
ACACCCTTGAACATTTATTTGCCGGTTTTATGCGCGATCACTTAAATGGCAAGGATGTGGAAATTATCGATATTTCCCCG
ATGGGCTGTCGCACCGGTTTTTATATGTCCTTAATCGGCACTCCAAATGAAACCCAAATCGCACAGGCGTGGGCAGCTTC
GATGCAGGATATTCTGAATGTAAAGAAACAAAGCAAAATTCCTGAACTAAATGAGTACCAATGCGGCACTTACACCGAGC
ATTCTTTGGAAGAAGCACATCAAATCGCACAAAATGTGTTGGATCGCGGTATCGGCGTAAATAAAAATGAAGATTTAACC
TTAGACGAAAGCTTATTAAAAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

100

0.732

Multiple sequence alignment