Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EP560_RS16320 Genome accession   NZ_CP035045
Coordinates   3375099..3375917 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain ABUH793     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3370099..3380917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EP560_RS16305 (EP560_16305) pilE 3370316..3370741 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  EP560_RS16310 (EP560_16310) pilY2 3370738..3371220 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  EP560_RS16315 (EP560_16315) pilY1 3371233..3375087 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  EP560_RS16320 (EP560_16320) pilX 3375099..3375917 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EP560_RS16325 (EP560_16325) pilW 3375914..3376915 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  EP560_RS16330 (EP560_16330) pilV 3376916..3377476 (-) 561 WP_086221688.1 type IV pilus modification protein PilV Machinery gene
  EP560_RS16335 (EP560_16335) fimU 3377470..3377943 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EP560_RS16340 (EP560_16340) ispH 3378113..3379063 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  EP560_RS16345 (EP560_16345) gmk 3379186..3379815 (+) 630 WP_000015937.1 guanylate kinase -
  EP560_RS16350 (EP560_16350) rpoZ 3379888..3380166 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  EP560_RS16355 (EP560_16355) - 3380205..3380335 (+) 131 Protein_3177 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=334180 EP560_RS16320 WP_000149374.1 3375099..3375917(-) (pilX) [Acinetobacter baumannii strain ABUH793]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=334180 EP560_RS16320 WP_000149374.1 3375099..3375917(-) (pilX) [Acinetobacter baumannii strain ABUH793]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment