Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | EP560_RS16305 | Genome accession | NZ_CP035045 |
| Coordinates | 3370316..3370741 (-) | Length | 141 a.a. |
| NCBI ID | WP_000788342.1 | Uniprot ID | N9K1U0 |
| Organism | Acinetobacter baumannii strain ABUH793 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3365316..3375741
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP560_RS16275 (EP560_16275) | - | 3365846..3366880 (+) | 1035 | WP_001189451.1 | lipase secretion chaperone | - |
| EP560_RS16280 (EP560_16280) | - | 3366995..3367936 (+) | 942 | WP_085946156.1 | lipase family alpha/beta hydrolase | - |
| EP560_RS16285 (EP560_16285) | rplS | 3367988..3368356 (-) | 369 | WP_000014562.1 | 50S ribosomal protein L19 | - |
| EP560_RS16290 (EP560_16290) | trmD | 3368564..3369304 (-) | 741 | WP_000464599.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EP560_RS16295 (EP560_16295) | rimM | 3369350..3369898 (-) | 549 | WP_000189236.1 | ribosome maturation factor RimM | - |
| EP560_RS16300 (EP560_16300) | rpsP | 3369918..3370169 (-) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| EP560_RS16305 (EP560_16305) | pilE | 3370316..3370741 (-) | 426 | WP_000788342.1 | type IV pilin protein | Machinery gene |
| EP560_RS16310 (EP560_16310) | pilY2 | 3370738..3371220 (-) | 483 | WP_001046417.1 | type IV pilin protein | Machinery gene |
| EP560_RS16315 (EP560_16315) | pilY1 | 3371233..3375087 (-) | 3855 | WP_000768966.1 | PilC/PilY family type IV pilus protein | Machinery gene |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15214.45 Da Isoelectric Point: 7.8464
>NTDB_id=334177 EP560_RS16305 WP_000788342.1 3370316..3370741(-) (pilE) [Acinetobacter baumannii strain ABUH793]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
Nucleotide
Download Length: 426 bp
>NTDB_id=334177 EP560_RS16305 WP_000788342.1 3370316..3370741(-) (pilE) [Acinetobacter baumannii strain ABUH793]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Acinetobacter baumannii D1279779 |
92.199 |
100 |
0.922 |
| comF | Acinetobacter baylyi ADP1 |
52.143 |
99.291 |
0.518 |