Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FXN59_RS10440 Genome accession   NZ_CP043004
Coordinates   2011908..2012603 (-) Length   231 a.a.
NCBI ID   WP_148327089.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2006908..2017603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS10420 (FXN59_10420) - 2007304..2007741 (+) 438 WP_151294892.1 DNA polymerase III subunit psi -
  FXN59_RS10425 (FXN59_10425) rimI 2007751..2008194 (+) 444 WP_005557888.1 ribosomal protein S18-alanine N-acetyltransferase -
  FXN59_RS10430 (FXN59_10430) recC 2008196..2011585 (-) 3390 WP_151294894.1 exodeoxyribonuclease V subunit gamma -
  FXN59_RS10435 (FXN59_10435) comQ 2011631..2011933 (-) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  FXN59_RS10440 (FXN59_10440) comP 2011908..2012603 (-) 696 WP_148327089.1 DUF2572 family protein Machinery gene
  FXN59_RS10445 (FXN59_10445) - 2012600..2013343 (-) 744 Protein_2006 hypothetical protein -
  FXN59_RS10450 (FXN59_10450) comN 2013330..2013851 (-) 522 WP_187372986.1 type II secretion system protein Machinery gene
  FXN59_RS10465 (FXN59_10465) pal 2014557..2015024 (-) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  FXN59_RS10470 (FXN59_10470) tolB 2015039..2016319 (-) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  FXN59_RS10475 (FXN59_10475) tolA 2016354..2017571 (-) 1218 WP_151294895.1 cell envelope integrity protein TolA -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26454.47 Da        Isoelectric Point: 8.9239

>NTDB_id=334168 FXN59_RS10440 WP_148327089.1 2011908..2012603(-) (comP) [Aggregatibacter actinomycetemcomitans strain HK_973]
MKRLYRGMMTMSLLLLLSAFLLLTMLFNDDLLRLYSAIAGQRNLYVEQQVKLLSLSQSTQRERCEKVPLDENGDVFLVQF
SLEGTPFPDGIRHHIWCQRDKLFQKSPVRNLHEGLLAQFIAESGLMIFREQLSGPPKNSVRKQPPSLYWFNADETEWTLD
KNVNAVIVAEGDLQIRGQGKISGSVITKGRLTLDAGIKVTYSKSTVAHIVQQYSRWRLAENSWYDFAVTEN

Nucleotide


Download         Length: 696 bp        

>NTDB_id=334168 FXN59_RS10440 WP_148327089.1 2011908..2012603(-) (comP) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGAAACGGCTTTACCGCGGTATGATGACGATGAGTTTGTTATTGCTGCTCAGCGCGTTTTTGCTGTTAACCATGCTATT
TAATGATGATTTATTGCGTCTGTATTCCGCTATTGCCGGTCAGCGAAATCTTTATGTTGAACAACAGGTTAAATTATTGT
CATTAAGTCAATCCACACAACGGGAACGATGTGAAAAGGTTCCGCTCGATGAAAACGGTGATGTGTTTTTAGTACAGTTT
TCTTTGGAAGGAACGCCCTTTCCCGATGGCATTCGACATCATATTTGGTGCCAACGTGATAAATTATTTCAAAAATCGCC
GGTGAGAAATCTGCATGAAGGCTTGTTAGCGCAATTTATTGCTGAAAGCGGGCTGATGATTTTTCGTGAGCAACTCTCCG
GGCCGCCCAAAAATTCCGTAAGGAAGCAACCGCCTTCCTTATATTGGTTTAACGCCGACGAAACGGAATGGACGCTTGAT
AAGAATGTGAATGCGGTGATTGTGGCGGAAGGTGATTTGCAGATTCGCGGGCAAGGCAAAATCAGCGGGAGTGTTATCAC
GAAAGGGCGATTAACTTTGGATGCAGGCATTAAAGTTACTTATTCCAAAAGCACCGTTGCGCACATAGTGCAACAGTACA
GCCGATGGCGTTTGGCGGAGAACAGTTGGTATGATTTTGCGGTTACGGAAAATTGA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(6-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

41.395

93.074

0.385