Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | EP560_RS09615 | Genome accession | NZ_CP035045 |
| Coordinates | 1968163..1968543 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain ABUH793 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1963163..1973543
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EP560_RS09585 (EP560_09585) | tadA | 1963281..1963784 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| EP560_RS09590 (EP560_09590) | - | 1963791..1964915 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| EP560_RS09595 (EP560_09595) | ung | 1964912..1965625 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| EP560_RS09600 (EP560_09600) | - | 1965676..1966272 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| EP560_RS09605 (EP560_09605) | gspK | 1966503..1967462 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| EP560_RS09610 (EP560_09610) | xcpW | 1967462..1968163 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| EP560_RS09615 (EP560_09615) | xcpV | 1968163..1968543 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| EP560_RS09620 (EP560_09620) | - | 1968533..1969087 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| EP560_RS09625 (EP560_09625) | - | 1969097..1969705 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| EP560_RS09630 (EP560_09630) | - | 1969743..1970516 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| EP560_RS09635 (EP560_09635) | - | 1970534..1970875 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| EP560_RS09640 (EP560_09640) | - | 1970887..1971867 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| EP560_RS09645 (EP560_09645) | kdsB | 1971879..1972640 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=334167 EP560_RS09615 WP_000836911.1 1968163..1968543(-) (xcpV) [Acinetobacter baumannii strain ABUH793]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=334167 EP560_RS09615 WP_000836911.1 1968163..1968543(-) (xcpV) [Acinetobacter baumannii strain ABUH793]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |