Detailed information NTG0334166

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: EP560_RS09610
• Genome accession: NZ_CP035045
• Coordinates: 1967462..1968163 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594589.1
• Uniprot ID: A0A9P3CZ31
• Organism: Acinetobacter baumannii strain ABUH793
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1962462..1973163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EP560_RS09580 (EP560_09580)	-	1962768..1963211 (-)	444	WP_001246675.1	SRPBCC family protein	-
EP560_RS09585 (EP560_09585)	tadA	1963281..1963784 (-)	504	WP_000033178.1	tRNA adenosine(34) deaminase TadA	-
EP560_RS09590 (EP560_09590)	-	1963791..1964915 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
EP560_RS09595 (EP560_09595)	ung	1964912..1965625 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
EP560_RS09600 (EP560_09600)	-	1965676..1966272 (-)	597	WP_000908452.1	6-pyruvoyl trahydropterin synthase family protein	-
EP560_RS09605 (EP560_09605)	gspK	1966503..1967462 (-)	960	WP_000301476.1	type II secretion system minor pseudopilin GspK	-
EP560_RS09610 (EP560_09610)	xcpW	1967462..1968163 (-)	702	WP_000594589.1	type II secretion system minor pseudopilin GspJ	Machinery gene
EP560_RS09615 (EP560_09615)	xcpV	1968163..1968543 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
EP560_RS09620 (EP560_09620)	-	1968533..1969087 (-)	555	WP_000841373.1	type II secretion system protein	-
EP560_RS09625 (EP560_09625)	-	1969097..1969705 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
EP560_RS09630 (EP560_09630)	-	1969743..1970516 (-)	774	WP_000497298.1	TatD family hydrolase	-
EP560_RS09635 (EP560_09635)	-	1970534..1970875 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
EP560_RS09640 (EP560_09640)	-	1970887..1971867 (-)	981	WP_001075411.1	DNA polymerase III subunit delta'	-
EP560_RS09645 (EP560_09645)	kdsB	1971879..1972640 (-)	762	WP_000680697.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26639.58 Da
• Isoelectric Point: 9.3468

>NTDB_id=334166 EP560_RS09610 WP_000594589.1 1967462..1968163(-) (xcpW) [Acinetobacter baumannii strain ABUH793]
MIKNKYIHIRSIDSRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=334166 EP560_RS09610 WP_000594589.1 1967462..1968163(-) (xcpW) [Acinetobacter baumannii strain ABUH793]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGATTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGTCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGCAAAGCAGGCGTAACGGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGACCAAAAAAAATTATATCGTCTTAAATATACAAATTTGAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.571	100	0.996