Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FXN59_RS05285 Genome accession   NZ_CP043004
Coordinates   997138..997740 (+) Length   200 a.a.
NCBI ID   WP_148324647.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 992138..1002740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS05260 (FXN59_05260) fecD 992535..993518 (-) 984 WP_148326638.1 Fe(3+) dicitrate ABC transporter permease subunit FecD -
  FXN59_RS05265 (FXN59_05265) fecC 993518..994507 (-) 990 WP_151294399.1 iron-dicitrate ABC transporter permease FecC -
  FXN59_RS05270 (FXN59_05270) - 994507..995400 (-) 894 WP_151294401.1 Fe(3+) dicitrate ABC transporter substrate-binding protein FecB -
  FXN59_RS05275 (FXN59_05275) - 995469..996539 (-) 1071 WP_151294403.1 metallophosphoesterase -
  FXN59_RS05280 (FXN59_05280) - 996724..997053 (+) 330 WP_005546714.1 YbaB/EbfC family nucleoid-associated protein -
  FXN59_RS05285 (FXN59_05285) recR 997138..997740 (+) 603 WP_148324647.1 recombination mediator RecR Machinery gene
  FXN59_RS05290 (FXN59_05290) - 997772..999709 (+) 1938 WP_151294405.1 DNA topoisomerase III -
  FXN59_RS05295 (FXN59_05295) secG 999870..1000226 (+) 357 WP_148326649.1 preprotein translocase subunit SecG -
  FXN59_RS05305 (FXN59_05305) - 1000606..1001463 (+) 858 WP_233443987.1 integrase arm-type DNA-binding domain-containing protein -
  FXN59_RS05310 (FXN59_05310) - 1001713..1001967 (+) 255 WP_148326651.1 EexN family lipoprotein -
  FXN59_RS12505 (FXN59_05320) nhaA 1002290..1002432 (-) 143 Protein_1013 Na(+)/H(+) antiporter NhaA -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21911.11 Da        Isoelectric Point: 6.2219

>NTDB_id=334155 FXN59_RS05285 WP_148324647.1 997138..997740(+) (recR) [Aggregatibacter actinomycetemcomitans strain HK_973]
MQTSPLLENLIESLRVLPGVGPKSAQRMAYHLLQRNRSGGMRLAQGLTEAMSKIGHCEHCRTFTEEEVCNICSNPRRQNS
GLLCVVETPADILAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLQTESFNEVILATNPTVEGDATANYIAEL
CLQQNVKVSRIAHGIPVGGELEMVDGTTLTHSFLGRREIG

Nucleotide


Download         Length: 603 bp        

>NTDB_id=334155 FXN59_RS05285 WP_148324647.1 997138..997740(+) (recR) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGCAAACCAGCCCCTTGTTAGAAAATCTGATCGAAAGTTTACGCGTATTGCCGGGCGTCGGTCCGAAATCCGCGCAACG
TATGGCGTATCATTTATTGCAACGCAATCGCAGCGGCGGAATGCGCTTGGCGCAAGGGCTGACGGAAGCGATGTCGAAAA
TCGGGCATTGCGAACATTGCCGCACTTTTACGGAAGAAGAGGTGTGCAACATTTGTAGTAATCCACGCCGTCAAAATTCG
GGCTTGCTTTGCGTGGTGGAAACGCCGGCGGATATTCTTGCTATTGAGCAAACAGGGCAGTTTTCCGGGCGTTATTTCGT
GCTGATGGGGCATTTGTCGCCGCTGGACGGTATCGGTCCGCGCGAAATCGGCTTGGATTTGTTGCAAAAACGCCTGCAAA
CGGAATCTTTCAATGAAGTGATTTTAGCCACTAACCCGACGGTAGAAGGCGACGCCACAGCAAACTACATTGCGGAACTT
TGCCTGCAACAAAATGTCAAAGTCAGTCGCATTGCCCACGGCATTCCGGTGGGGGGCGAATTGGAAATGGTGGACGGCAC
CACGCTGACCCATTCCTTCTTAGGTCGCCGCGAAATCGGCTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.221

99.5

0.44

Multiple sequence alignment