Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FXN59_RS04315 Genome accession   NZ_CP043004
Coordinates   805503..806009 (+) Length   168 a.a.
NCBI ID   WP_148323473.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 800503..811009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS04275 (FXN59_04275) rep 800557..802572 (+) 2016 WP_151294314.1 DNA helicase Rep -
  FXN59_RS04295 (FXN59_04295) - 803088..803468 (-) 381 WP_151294316.1 PRD domain-containing protein -
  FXN59_RS04300 (FXN59_04300) - 803596..804199 (+) 604 Protein_825 beta-phosphoglucomutase family hydrolase -
  FXN59_RS04305 (FXN59_04305) - 804199..804804 (+) 606 WP_148323477.1 sugar O-acetyltransferase -
  FXN59_RS04310 (FXN59_04310) - 804807..805290 (+) 484 Protein_827 YqaA family protein -
  FXN59_RS04315 (FXN59_04315) luxS 805503..806009 (+) 507 WP_148323473.1 S-ribosylhomocysteine lyase Regulator
  FXN59_RS12050 - 806176..806340 (+) 165 WP_005538560.1 hypothetical protein -
  FXN59_RS04320 (FXN59_04320) - 806379..807146 (-) 768 WP_151294318.1 IS5 family transposase -
  FXN59_RS04325 (FXN59_04325) - 807269..808597 (+) 1329 WP_151294320.1 DUF4123 domain-containing protein -
  FXN59_RS04330 (FXN59_04330) - 808584..810611 (+) 2028 WP_262404600.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18961.78 Da        Isoelectric Point: 6.7533

>NTDB_id=334151 FXN59_RS04315 WP_148323473.1 805503..806009(+) (luxS) [Aggregatibacter actinomycetemcomitans strain HK_973]
MPLLDSFKVDHTRMKAPAVRIAKTMRTPKGDNITVFDLRFTIPNKENLPPKGIHTLEHLFAGFMRDHLNGKDVEIIDISP
MGCRTGFYMSLIGTPNETQIAQAWAASMQDILNVKKQSKIPELNEYQCGTYTEHSLEEAHQIAQNVLDRGIGVNKNEDLT
LDESLLKK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=334151 FXN59_RS04315 WP_148323473.1 805503..806009(+) (luxS) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACCCGAATGAAGGCGCCTGCCGTGCGAATTGCGAAGACCATGCGCAC
TCCAAAAGGAGACAATATCACCGTTTTTGATCTTCGTTTCACGATACCTAACAAAGAAAACTTGCCACCGAAAGGTATTC
ACACCCTTGAACATTTATTTGCCGGTTTTATGCGCGATCACTTAAATGGCAAGGATGTGGAAATTATCGATATTTCCCCG
ATGGGCTGTCGCACCGGTTTTTATATGTCCTTAATCGGCACTCCAAATGAAACCCAAATCGCACAGGCGTGGGCAGCTTC
GATGCAGGATATTCTGAATGTAAAGAAACAAAGCAAAATTCCTGAACTAAATGAGTACCAATGCGGCACTTACACCGAGC
ATTCTTTGGAAGAAGCACATCAAATCGCACAAAATGTGTTGGATCGCGGTATCGGCGTAAATAAAAATGAAGATTTAACC
TTAGACGAAAGCTTATTAAAAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

100

0.732

Multiple sequence alignment