Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FXN59_RS02430 Genome accession   NZ_CP043004
Coordinates   453352..456183 (+) Length   943 a.a.
NCBI ID   WP_151294169.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_973     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 448352..461183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN59_RS02405 (FXN59_02405) - 448468..448968 (-) 501 WP_262404586.1 Mov34/MPN/PAD-1 family protein -
  FXN59_RS02410 (FXN59_02410) - 448989..449756 (+) 768 WP_151294167.1 IS5 family transposase -
  FXN59_RS02415 (FXN59_02415) - 449817..451094 (-) 1278 WP_262404587.1 ThiF family adenylyltransferase -
  FXN59_RS12345 - 451110..451439 (-) 330 WP_262404588.1 hypothetical protein -
  FXN59_RS02420 (FXN59_02420) - 451441..452373 (-) 933 WP_148328600.1 nucleotidyltransferase -
  FXN59_RS02425 (FXN59_02425) ssb 452696..453181 (-) 486 WP_042889788.1 single-stranded DNA-binding protein Machinery gene
  FXN59_RS02430 (FXN59_02430) uvrA 453352..456183 (+) 2832 WP_151294169.1 excinuclease ABC subunit UvrA Machinery gene
  FXN59_RS02435 (FXN59_02435) - 456252..456662 (-) 411 WP_005579882.1 MerR family transcriptional regulator -
  FXN59_RS02440 (FXN59_02440) - 456783..457094 (-) 312 WP_005561250.1 DciA family protein -
  FXN59_RS02445 (FXN59_02445) secM 457186..457503 (+) 318 WP_005561253.1 secA translation cis-regulator SecM -
  FXN59_RS02450 (FXN59_02450) secA 457576..460275 (+) 2700 WP_148327138.1 preprotein translocase subunit SecA -
  FXN59_RS02455 (FXN59_02455) mutT 460352..460756 (+) 405 WP_005544584.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104339.26 Da        Isoelectric Point: 7.2235

>NTDB_id=334138 FXN59_RS02430 WP_151294169.1 453352..456183(+) (uvrA) [Aggregatibacter actinomycetemcomitans strain HK_973]
MDTIDIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPHHHVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKERKG
EHVKLLQQIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETTLELSGGTAVVAYMDDP
KAEELVFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNPGISLANGAIKGWDRRNFYYYQM
LTSLAKHYHFDIETPFEALPKKIQQIILNGSGKEEIEFQYMNDRGDVVLRRHAFEGILNNMARRYKETESMSVREELAKH
ISNRPCADCGGSRLRPEARNVYIEQTNLPEVSEKSIGEALNFFGDLQLSGQKAQIAEKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILSADHIIDI
GPGAGVHGGSVIAEGTAQQIMQNPNSLTGKFLSGAEKIEIPKKRTALDKKKMLKLFGASGNNLKNVNLDIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENAEVSPYKSIKGLEFFDKVIDINQSPIGRTPRSNPATYTGVFTPIRELFAGVLE
ARARGYNPGRFSFNVRGGRCETCQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEDAREFF
DAIPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLSVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKMEGSHTARFLKDILAKG

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=334138 FXN59_RS02430 WP_151294169.1 453352..456183(+) (uvrA) [Aggregatibacter actinomycetemcomitans strain HK_973]
ATGGATACCATCGACATTCGTGGGGCACGGACCCACAATCTGAAAAATATTAACTTAACCATTCCACGCGACAAACTTAT
CGTCATCACCGGTTTATCCGGTTCGGGCAAGTCTTCGCTGGCGTTTGATACGCTGTATGCGGAAGGACAACGCCGTTATG
TGGAATCCCTTTCCGCCTATGCGCGCCAGTTTCTGTCATTAATGGAAAAACCCGATGTGGACCACATTGAAGGGCTTTCA
CCGGCGATTTCCATTGAGCAAAAATCCACCTCCCACAATCCGCGTTCAACGGTGGGGACGATTACCGAAATTCATGATTA
CCTGCGTTTATTGTTTGCCCGCGTGGGCGAACCGCGCTGCCCGCATCATCATGTGCCGCTCACCGCGCAAACCATCAGCC
AAATGGTGGATAAAGTGCTTTCCCTGCCGGAAGACAGCAAAATGATGCTGCTGGCGCCGGTGGTGAAAGAACGCAAAGGC
GAACACGTTAAGCTGTTGCAACAAATTGCCGCGCAAGGCTACATTCGCGCCCGTATCGACGGCGAAATTTGCGATTTATC
CGATCCGCCAAAACTGGAATTACAGAAAAAACATACTATCGAAGTGGTGGTGGATCGCTTTAAAGTGCGGTCGGATTTAG
CCACAAGATTGGCGGAATCCTTTGAAACCACGTTGGAATTATCGGGCGGCACGGCAGTGGTTGCCTACATGGACGATCCG
AAAGCGGAAGAGTTGGTGTTCTCCGCCAACTTTGCCTGCCCCCATTGCGGCTACTCCGTGCCGGAACTGGAACCGCGTCT
GTTTTCCTTCAATAACCCGGCAGGCGCTTGCCCGACCTGCGACGGTTTAGGCGTGCAGCAATATTTTGATGAAAAACGCG
TGGTGCAAAATCCGGGCATTTCCCTTGCCAACGGCGCCATTAAAGGCTGGGATCGCCGTAATTTTTATTATTACCAAATG
CTCACTTCCCTGGCGAAACACTACCATTTCGACATTGAAACGCCGTTTGAAGCATTACCGAAAAAAATCCAACAGATTAT
TTTGAATGGTTCCGGCAAGGAAGAAATCGAGTTTCAATACATGAACGATCGCGGCGATGTAGTGCTGCGCCGTCATGCCT
TTGAAGGCATTTTGAATAACATGGCGCGCCGTTATAAAGAAACGGAATCCATGTCGGTGCGCGAAGAGCTCGCTAAACAC
ATCAGCAACCGCCCTTGTGCCGATTGCGGCGGTTCCCGTTTACGCCCGGAAGCGCGCAATGTGTATATTGAACAAACCAA
TCTGCCTGAGGTGTCGGAAAAAAGCATCGGTGAAGCGCTAAATTTCTTCGGTGACTTACAACTCAGCGGACAAAAAGCCC
AAATCGCGGAAAAAATCCTGAAAGAGATAAAAGAGCGGTTACAATTTTTAGTGAATGTGGGCTTGAATTATCTTTCCCTT
TCCCGTTCCGCCGAAACCCTTTCGGGCGGCGAAGCACAACGAATTCGCCTCGCCAGCCAAATTGGTGCGGGGCTGGTTGG
CGTGATGTACGTGTTGGATGAACCTTCCATCGGCTTGCACCAACGGGATAATGAACGCCTGCTTAACACCTTGATTCATC
TACGTAATTTAGGCAACACGGTAATAGTGGTGGAACATGACGAAGACGCCATTTTGAGTGCCGACCACATTATCGACATC
GGTCCGGGCGCGGGCGTACACGGCGGTAGCGTCATTGCCGAAGGCACTGCACAGCAAATTATGCAGAATCCGAATTCTTT
AACGGGGAAATTTTTATCGGGCGCGGAAAAGATCGAAATACCGAAAAAACGTACCGCACTTGATAAGAAAAAAATGCTCA
AATTGTTCGGCGCTTCCGGTAACAACCTGAAAAACGTCAATTTAGACATTCCCGTGGGCTTATTTACCTGCATCACCGGC
GTGTCCGGTTCAGGTAAATCTACACTGATTAACGACACTCTGTTCCCTATTGCACAAAACGCCTTGAATCGTGCAGAAAA
TGCCGAGGTATCGCCGTACAAGTCCATTAAAGGTTTGGAATTTTTCGATAAAGTTATTGATATTAACCAAAGCCCGATCG
GACGCACACCGCGTTCCAACCCGGCGACTTACACGGGCGTATTCACGCCGATTCGCGAACTATTTGCCGGCGTACTGGAA
GCCCGTGCGCGCGGTTACAACCCGGGGCGTTTCAGTTTTAACGTGCGCGGCGGGCGCTGTGAAACCTGTCAGGGCGATGG
CGTAATCAAAGTGGAAATGCACTTCCTGCCTGATGTGTACGTGCCTTGTGACCAATGTAAAGGCAAGCGTTACAATCGCG
AAACCCTGGAAATCCGCTACAAAGGTAAAACCATTCATCAGGTGCTGGACATGACGGTGGAAGATGCGCGCGAGTTTTTC
GATGCCATTCCAATGATTGCGCGTAAATTGCAAACCCTGATTGACGTGGGCTTGTCTTACATTCGTCTGGGGCAGTCCTC
TACCACCTTGTCCGGCGGGGAAGCGCAACGGGTGAAACTGGCGACGGAACTCTCCAAACGGGATACGGGCAAAACCCTGT
ATATTCTGGACGAACCGACCACAGGGCTGCATTTTGCCGACATCAAACAATTGCTTTCCGTGTTACACCGTTTACGCGAT
CAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTGGATTTGGGACCTGA
AGGCGGTAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGCTCGCACACCGCAC
GCTTCCTCAAAGACATCCTGGCAAAAGGCTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.234

99.682

0.571
  uvrA Streptococcus pneumoniae TIGR4

57.234

99.682

0.571
  uvrA Streptococcus pneumoniae D39

57.234

99.682

0.571

Multiple sequence alignment