Detailed information NTG0334118

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: FXN58_RS09025
• Genome accession: NZ_CP043003
• Coordinates: 1730451..1731878 (-)
• Length: 475 a.a.
• NCBI ID: WP_148325433.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain HK_907
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1725451..1736878

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FXN58_RS08995 (FXN58_08990)	ftnA	1725453..1725950 (-)	498	WP_148325430.1	non-heme ferritin	-
FXN58_RS09000 (FXN58_08995)	ftnA	1725967..1726452 (-)	486	WP_005544704.1	non-heme ferritin	-
FXN58_RS09005 (FXN58_09000)	-	1727280..1728428 (-)	1149	WP_148325861.1	type II secretion system protein GspD	-
FXN58_RS09010 (FXN58_09005)	-	1728412..1729542 (-)	1131	WP_148325431.1	zonular occludens toxin family protein	-
FXN58_RS09015 (FXN58_09010)	-	1729550..1729855 (-)	306	WP_005566786.1	DUF2523 family protein	-
FXN58_RS09020 (FXN58_09015)	-	1729863..1730162 (-)	300	WP_148325432.1	hypothetical protein	-
FXN58_RS09025 (FXN58_09020)	sbcB	1730451..1731878 (-)	1428	WP_148325433.1	exodeoxyribonuclease I	Machinery gene
FXN58_RS09030 (FXN58_09025)	-	1731890..1732843 (-)	954	WP_148325434.1	EamA family transporter	-

Sequence

Protein

• Length: 475 a.a.
• Molecular weight: 54894.52 Da
• Isoelectric Point: 5.2995

>NTDB_id=334118 FXN58_RS09025 WP_148325433.1 1730451..1731878(-) (sbcB) [Aggregatibacter actinomycetemcomitans strain HK_907]
MMAKNDFSFFIYDYESFGVNPATDRPAQFGGIRTDADFNIIGEPIVLYCKQTNDYLPAPEAVLVTGITSQECNEKGLSEP
EFAAKILQEFSRPNTCVMGFNNIRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWPLDDEGMP
SFRLEKLTEANGIAHDSAHDAMSDVYATIEMAKLIKRKQPKLFQYFFKNRGKKEVEKLIDTAEMMPLVHVSGMLGNYRGN
TTLIAPLAWHPANKNAVIVCDLTANIDDLLTISAEELRENLYTKKETLLAAGALPVPLKLIHINKCPIVAPAKTLLPQNA
ERLGIDQELCAQNRQRLQEAKDIRQKVMDIFHQEREFDASDNVETELYNGFFSDADKNNMAILRSLEPEKLAKHNLSFQD
PRIPELLFHYRARHFYRTLNRAEQIKWQKYCRKKLDAEALQFEQRLQELAEQYSNNEENLMLLQKVYEYGTKIIG

Nucleotide

• Length: 1428 bp

>NTDB_id=334118 FXN58_RS09025 WP_148325433.1 1730451..1731878(-) (sbcB) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGATGGCAAAAAACGACTTTAGTTTTTTTATTTATGATTATGAAAGTTTTGGGGTCAATCCCGCAACGGATCGCCCGGC
ACAATTCGGTGGCATTCGCACTGACGCGGATTTTAATATTATCGGTGAGCCGATTGTTCTTTATTGCAAGCAAACTAACG
ATTATTTGCCGGCACCGGAAGCGGTTTTAGTCACCGGAATTACATCACAGGAATGCAACGAAAAAGGGCTGTCGGAACCC
GAATTTGCCGCCAAAATTTTACAGGAATTCAGCCGTCCGAATACTTGCGTGATGGGCTTTAATAACATTCGTTATGACGA
TGAAATGACCCGTTATACGTTTTACCGTAATTTTATCGATCCTTATGAATACAGCTGGAAAAACGGCAATTCCCGTTGGG
ATTTACTGGATTTGGTGCGTGCTTGCTATGCGTTGCGCCCGGACGGTATTGAATGGCCTTTAGATGATGAAGGTATGCCG
AGTTTCCGCCTGGAAAAACTGACAGAGGCCAATGGAATAGCGCACGATAGTGCGCATGATGCCATGTCAGATGTGTATGC
CACTATTGAAATGGCAAAGCTCATCAAGCGGAAACAGCCTAAATTATTCCAATATTTCTTTAAAAATCGGGGTAAAAAGG
AGGTTGAAAAGCTCATCGATACCGCAGAAATGATGCCATTGGTACATGTGTCGGGAATGTTGGGGAATTATCGCGGAAAT
ACCACGTTAATTGCACCTTTAGCCTGGCATCCGGCGAATAAAAATGCCGTTATTGTGTGTGATTTAACTGCCAATATTGA
TGATTTATTAACAATATCGGCAGAGGAGTTGCGTGAAAATCTTTATACCAAAAAAGAAACTTTATTGGCTGCCGGTGCAT
TGCCTGTGCCATTGAAGCTCATTCATATCAATAAATGTCCGATTGTTGCGCCGGCTAAAACTTTGTTGCCACAAAACGCC
GAACGTTTAGGTATTGATCAGGAGTTATGTGCGCAAAACCGACAACGTTTGCAGGAAGCAAAAGATATTCGCCAAAAAGT
AATGGATATTTTTCATCAGGAACGTGAATTTGACGCTTCCGATAATGTTGAAACCGAACTGTATAACGGCTTTTTTAGTG
ACGCCGATAAAAACAATATGGCGATTTTACGCAGTTTGGAACCCGAAAAATTGGCTAAACATAATCTTAGTTTTCAAGAT
CCACGAATTCCTGAATTGCTGTTCCATTATCGTGCCAGACATTTCTATCGTACATTGAACCGTGCGGAACAAATTAAATG
GCAAAAATACTGCCGTAAAAAATTAGATGCCGAGGCTTTGCAATTTGAACAACGTCTTCAAGAATTAGCCGAACAATATT
CCAACAATGAAGAAAATCTTATGTTATTGCAAAAGGTCTATGAATATGGAACGAAAATAATCGGTTAG

Domains

Predicted by InterProScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (ExoI_SH3) (210-471)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	53.066	99.579	0.528