Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FXN58_RS03775 Genome accession   NZ_CP043003
Coordinates   715502..717391 (+) Length   629 a.a.
NCBI ID   WP_187386218.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 710502..722391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS03750 (FXN58_03745) - 712263..712823 (-) 561 WP_148324114.1 DNA-3-methyladenine glycosylase I -
  FXN58_RS03755 (FXN58_03750) - 713023..713628 (+) 606 WP_005540687.1 DUF1440 domain-containing protein -
  FXN58_RS03760 (FXN58_03755) lysA 713681..714931 (-) 1251 WP_148324118.1 diaminopimelate decarboxylase -
  FXN58_RS12250 (FXN58_03760) - 714949..715068 (-) 120 WP_005540691.1 lipoprotein -
  FXN58_RS03770 (FXN58_03765) cyaY 715191..715505 (+) 315 WP_005540693.1 iron donor protein CyaY -
  FXN58_RS03775 (FXN58_03770) recQ 715502..717391 (+) 1890 WP_187386218.1 DNA helicase RecQ Machinery gene
  FXN58_RS03780 (FXN58_03775) gyrB 717488..719908 (+) 2421 WP_148324121.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FXN58_RS03785 (FXN58_03780) coaA 719963..720877 (-) 915 WP_222859996.1 type I pantothenate kinase -

Sequence

Protein


Download         Length: 629 a.a.        Molecular weight: 70988.10 Da        Isoelectric Point: 7.6141

>NTDB_id=334102 FXN58_RS03775 WP_187386218.1 715502..717391(+) (recQ) [Aggregatibacter actinomycetemcomitans strain HK_907]
MSDLNPSESTKSAVDFADESSVNSTALHASALHVLHSVFGYQSFRKGQQEIINAVLNGRDCLVIMATGTGKSLCYQIPAL
CFDGTTLVVSPLISLMKDQVDQLRANGVEADYLNSTQTFEEQQQVQNRAISGQLKLLYLSPEKVMTSSFFQFISLCQVSF
IAIDEAHCISQWGHDFRPEYTQLGGLKGSFPNVPIMALTATADQTTQQDILQNLRLNRPHFYVGSFDRPNIRYTLVEKFK
PMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLCNKGVRAAAYHAGMENGLREKVQRDFQRDNIQVVVATIAFGMGINK
SNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDPADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAESQTCRR
LVLLNYFGEHRQTPCQNCDICLDPPKKYNGLLDAQKIMSAIYRTGQCYGAHYVIAVLRGMNNQKIREQHHEQLSVYGIGK
EHSTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAKPILRGEELLELATPRLSSIVTTAMTPKSAVGSYDKDLFARLR
FLRKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQINGVGAIKLERFGQAFLALIREHKSARAGE

Nucleotide


Download         Length: 1890 bp        

>NTDB_id=334102 FXN58_RS03775 WP_187386218.1 715502..717391(+) (recQ) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGAGCGACCTTAACCCGTCCGAATCAACAAAAAGTGCGGTAGATTTTGCCGATGAATCGTCGGTAAATTCCACCGCACT
TCATGCTTCCGCATTGCACGTTTTGCATTCGGTTTTCGGCTATCAATCCTTCCGCAAAGGGCAGCAGGAAATCATCAATG
CGGTACTTAACGGGCGGGATTGTTTGGTGATTATGGCGACGGGCACGGGCAAATCGTTGTGTTATCAAATTCCCGCCCTT
TGTTTTGACGGCACGACGCTGGTGGTTTCACCGTTGATTTCCCTGATGAAAGACCAAGTGGATCAACTGCGCGCCAACGG
CGTGGAAGCGGATTATTTAAATTCCACACAAACCTTCGAAGAACAGCAACAGGTACAAAATCGGGCGATTTCCGGGCAAT
TAAAATTATTGTATTTATCGCCGGAAAAAGTCATGACCAGCAGCTTTTTCCAATTTATTTCTTTATGCCAAGTGAGTTTT
ATCGCCATTGATGAGGCGCACTGTATTTCCCAATGGGGACATGATTTTCGTCCCGAATATACCCAACTCGGTGGCTTAAA
AGGCAGTTTTCCGAACGTGCCGATCATGGCGCTCACTGCTACAGCGGATCAGACTACACAACAAGACATCCTGCAAAATC
TCCGGCTAAATCGACCGCACTTTTATGTGGGCAGCTTCGATCGCCCGAACATTCGTTACACCTTGGTGGAAAAATTCAAA
CCCATGGAGCAGCTTTGCCGTTTCGTACTGGCGCAAAAAGGCAAGAGCGGCATTGTGTATTGCAACAGCCGCAATAAAGT
GGAACGTATCGCAGAAACCCTGTGCAACAAAGGCGTGCGGGCGGCGGCGTATCATGCCGGCATGGAAAACGGCTTGCGCG
AAAAAGTACAACGGGATTTTCAGCGTGACAACATTCAAGTGGTGGTGGCGACCATTGCGTTCGGGATGGGCATTAATAAA
TCCAACGTGCGCTTTGTGGCACATTTTGACCTGCCGCGCAGCATCGAATCCTACTATCAGGAAACGGGACGCGCCGGGCG
TGATGATTTGCCGGCGGAAGCGGTGTTGTTTTATGACCCGGCAGATTATGTGTGGCTTAACAAAATGCTGATGGAAAAGC
CGGAAACGCCGCAACGGCAGATTGAACAGCACAAATTGCAAGCCATCGGCGAATTTGCCGAAAGCCAAACCTGCCGCCGT
TTGGTTTTATTGAACTATTTCGGCGAACATCGCCAAACGCCCTGTCAAAATTGCGATATTTGTCTCGATCCACCGAAAAA
ATACAACGGCTTGCTGGACGCGCAAAAAATCATGTCGGCGATTTATCGCACCGGTCAATGTTATGGCGCGCATTATGTCA
TCGCCGTGTTGCGCGGCATGAACAATCAGAAAATTCGTGAGCAGCACCATGAGCAGTTAAGCGTGTACGGCATTGGCAAA
GAACACAGCACGGAATATTGGCAATCGGTATTGCGCCAGCTGGTACACTTAGGTTTGGTACGCCAAATCATCGGCGAATA
CGGCAACACCTTACAATTAACAGAAAACGCCAAACCGATTTTACGCGGAGAAGAACTGCTGGAATTGGCAACACCACGGC
TGTCTTCCATTGTCACTACCGCCATGACGCCCAAAAGTGCGGTGGGTTCTTACGACAAAGATCTGTTTGCCCGCTTGCGC
TTTCTGCGTAAACAAATTGCCGATAAGGAAAATATTCCGCCGTATATTGTGTTTAACGACGCAACGCTACAGGAAATGGC
GCAATATCAACCTGTCAGTAACATTGAAATGCTGCAAATCAACGGCGTTGGCGCCATTAAACTGGAGCGTTTCGGACAAG
CATTTCTTGCTTTGATCCGCGAACATAAAAGTGCCCGCGCCGGCGAATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(361-422)

DEAD/DEAH box helicase (DEAD)

(47-206)

RQC domain (RQC)

(424-533)

Helicase conserved C-terminal domain (Helicase_C)

(243-347)

HRDC domain (HRDC)

(553-619)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.328

94.595

0.372