Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FXN58_RS02800 Genome accession   NZ_CP043003
Coordinates   520521..523352 (-) Length   943 a.a.
NCBI ID   WP_148323768.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 515521..528352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS02775 (FXN58_02770) mutT 515948..516352 (-) 405 WP_005544584.1 8-oxo-dGTP diphosphatase MutT -
  FXN58_RS02780 (FXN58_02775) secA 516429..519128 (-) 2700 WP_148323763.1 preprotein translocase subunit SecA -
  FXN58_RS02785 (FXN58_02780) secM 519201..519518 (-) 318 WP_005561253.1 secA translation cis-regulator SecM -
  FXN58_RS02790 (FXN58_02785) - 519610..519921 (+) 312 WP_005561250.1 DciA family protein -
  FXN58_RS02795 (FXN58_02790) - 520042..520452 (+) 411 WP_148323766.1 MerR family transcriptional regulator -
  FXN58_RS02800 (FXN58_02795) uvrA 520521..523352 (-) 2832 WP_148323768.1 excinuclease ABC subunit UvrA Machinery gene
  FXN58_RS02805 (FXN58_02800) ssb 523523..524008 (+) 486 WP_042889788.1 single-stranded DNA-binding protein Machinery gene
  FXN58_RS02810 (FXN58_02805) - 524330..525262 (+) 933 WP_148323770.1 nucleotidyltransferase -
  FXN58_RS02815 (FXN58_02810) - 525264..526886 (+) 1623 WP_148323772.1 ThiF family adenylyltransferase -
  FXN58_RS02820 (FXN58_02815) - 526947..527714 (-) 768 WP_148323191.1 IS5-like element ISAac2 family transposase -
  FXN58_RS02825 (FXN58_02820) - 527849..528235 (+) 387 WP_392388678.1 Mov34/MPN/PAD-1 family protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104310.26 Da        Isoelectric Point: 7.1271

>NTDB_id=334092 FXN58_RS02800 WP_148323768.1 520521..523352(-) (uvrA) [Aggregatibacter actinomycetemcomitans strain HK_907]
MDTIDIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIKGLS
PAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPHHHVPLTAQTISQMVDKVLSLPEDSKMMLLAPVVKERKG
EHVKLLQQIAAQGYIRALIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETTLELSGGTAVVAYMDDP
KAEELVFSANFACPHCGYSVPELEPRLFSFNNPAGACPTCDGLGVQQYFDEKRVVQNLGISLANGAIKGWDRRNFYYYQM
LTSLAKHYHFDIETPFEALPKKIQQIILNGSGKEEIEFQYMNDRGDVVLRRHAFEGILNNMARRYKETESMSVREELAKH
ISNRPCADCGGSRLRPEARNVYIEQTNLPEVSEKSIGEALNFFGDLQLSGQKAQIAEKILKEIKERLQFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAILSADHIIDI
GPGAGVHGGSVIAEGTAQQIMQNPNSLTGKFLSGAEKIEIPKKRTALDKKKMLKLFGASGNNLKNVNLDIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENAEVSPYKSIKGLEFFDKVIDINQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCETCQGDGIIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEDAREFF
DAIPMIARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLSVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIATGTPEQVAKMEGSHTARFLEDILAKG

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=334092 FXN58_RS02800 WP_148323768.1 520521..523352(-) (uvrA) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGGATACCATCGACATTCGTGGGGCACGAACCCACAATCTGAAAAATATTAACTTAACCATTCCACGCGACAAACTTAT
CGTCATCACCGGTTTATCCGGTTCGGGCAAGTCTTCGCTGGCGTTTGATACGCTGTATGCGGAAGGACAACGCCGTTATG
TGGAATCCCTTTCCGCCTATGCGCGCCAGTTTCTGTCATTAATGGAAAAACCCGATGTGGACCACATTAAAGGGCTTTCA
CCGGCGATTTCCATTGAGCAAAAATCCACCTCCCACAATCCGCGTTCAACGGTGGGGACGATTACCGAAATTCATGATTA
CCTGCGTTTATTGTTTGCCCGCGTGGGCGAACCGCGCTGCCCGCATCATCATGTGCCGCTCACCGCGCAAACCATCAGCC
AAATGGTGGATAAAGTGCTTTCCCTGCCGGAAGACAGCAAAATGATGCTGCTGGCGCCGGTGGTGAAAGAACGCAAAGGC
GAACACGTTAAGCTGTTGCAACAAATTGCCGCGCAAGGCTACATTCGCGCCCTTATCGACGGCGAAATTTGCGATTTATC
CGATCCGCCGAAACTGGAATTACAGAAAAAACATACTATCGAAGTGGTGGTGGATCGCTTTAAAGTGCGGTCGGATTTAG
CCACAAGATTGGCGGAATCCTTTGAAACCACGTTGGAATTATCGGGCGGCACGGCAGTGGTTGCCTACATGGACGATCCG
AAAGCGGAAGAGTTGGTGTTCTCCGCCAACTTTGCCTGCCCCCATTGCGGCTACTCCGTGCCGGAACTGGAACCGCGTCT
GTTTTCCTTCAATAACCCGGCAGGCGCTTGCCCGACCTGCGACGGTTTAGGCGTGCAGCAATATTTTGATGAAAAACGCG
TGGTGCAAAATCTGGGCATTTCCCTTGCCAACGGCGCCATTAAAGGCTGGGATCGCCGTAATTTTTATTATTACCAAATG
CTCACTTCCCTGGCGAAACACTACCATTTCGACATTGAAACGCCGTTTGAAGCATTACCGAAAAAAATCCAACAGATTAT
TTTGAATGGTTCCGGCAAGGAAGAAATCGAGTTTCAATACATGAACGATCGCGGCGATGTAGTGCTGCGCCGTCATGCCT
TTGAAGGCATTTTGAATAACATGGCGCGCCGTTATAAAGAAACGGAATCCATGTCGGTGCGCGAAGAGCTCGCTAAACAC
ATCAGCAACCGCCCTTGTGCCGATTGCGGCGGTTCCCGTTTACGCCCGGAAGCGCGCAATGTGTATATTGAACAAACCAA
TCTGCCTGAGGTGTCGGAAAAAAGCATCGGTGAAGCGCTAAATTTCTTCGGTGACTTACAACTCAGCGGACAAAAAGCCC
AAATCGCGGAAAAAATCCTGAAAGAGATAAAAGAGCGGTTACAATTTTTAGTGAATGTGGGCTTGAATTATCTTTCCCTT
TCCCGTTCCGCCGAAACCCTTTCGGGCGGCGAAGCACAACGAATTCGCCTCGCCAGCCAAATTGGTGCGGGGCTGGTTGG
CGTGATGTACGTGTTGGATGAACCTTCCATCGGCTTGCACCAACGGGATAATGAACGCCTGCTTAACACCTTGATTCATC
TACGTAATTTAGGCAACACGGTAATCGTGGTGGAACATGACGAAGACGCCATTTTGAGTGCCGACCACATTATCGACATC
GGTCCGGGCGCGGGCGTACACGGCGGTAGCGTCATTGCCGAAGGCACTGCACAGCAAATTATGCAGAATCCGAATTCTTT
AACGGGGAAATTTTTATCGGGCGCGGAAAAGATCGAAATACCGAAAAAACGTACCGCACTTGATAAGAAAAAAATGCTCA
AATTGTTCGGCGCTTCCGGTAACAACCTGAAAAACGTCAATTTAGACATTCCCGTGGGCTTATTTACCTGCATCACCGGC
GTGTCCGGTTCAGGTAAATCTACACTGATTAACGACACTCTGTTCCCTATTGCACAAAACGCCTTGAATCGTGCAGAAAA
TGCCGAGGTATCGCCGTACAAGTCCATTAAAGGTTTGGAATTTTTCGATAAAGTTATTGATATTAACCAAAGCCCGATCG
GACGCACACCGCGTTCCAACCCGGCGACTTACACGGGCGTATTCACGCCGATTCGCGAACTATTTGCCGGCGTACCGGAA
GCCCGTGCGCGCGGTTACAACCCGGGGCGTTTCAGTTTTAACGTGCGCGGCGGGCGCTGTGAAACCTGTCAGGGCGATGG
CATAATCAAAGTGGAAATGCACTTCCTGCCTGATGTGTACGTGCCTTGTGACCAATGTAAAGGCAAGCGTTACAATCGCG
AAACCCTGGAAATCCGCTACAAAGGTAAAACCATTCATCAGGTGCTGGACATGACGGTGGAAGATGCGCGCGAGTTTTTC
GATGCCATTCCAATGATTGCGCGTAAATTGCAAACCCTGATTGACGTGGGCTTGTCTTACATTCGTCTGGGGCAGTCCTC
TACCACCTTGTCCGGCGGGGAAGCGCAACGGGTGAAACTGGCGACGGAACTCTCCAAACGGGATACGGGCAAAACCCTGT
ATATTCTGGACGAACCGACCACAGGGCTGCATTTTGCCGACATCAAACAATTGCTTTCCGTGTTACACCGTTTACGCGAT
CAAGGCAACACCATCGTGGTCATTGAGCATAATTTAGACGTGATTAAAACCGCCGACTGGATTGTGGATTTGGGACCTGA
AGGCGGTAGCGGCGGCGGACAAATTATCGCGACCGGCACACCGGAACAGGTTGCCAAAATGGAGGGTTCGCACACCGCAC
GCTTCCTCGAAGACATCCTGGCAAAAGGCTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-238)

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.128

99.682

0.569
  uvrA Streptococcus pneumoniae TIGR4

57.128

99.682

0.569
  uvrA Streptococcus pneumoniae D39

57.128

99.682

0.569