Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FXN58_RS01495 Genome accession   NZ_CP043003
Coordinates   282808..283314 (-) Length   168 a.a.
NCBI ID   WP_148323473.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 277808..288314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS01445 (FXN58_01440) - 278091..278321 (+) 231 WP_148323467.1 YnbE family lipoprotein -
  FXN58_RS01455 (FXN58_01450) - 279217..279492 (+) 276 Protein_283 Arm DNA-binding domain-containing protein -
  FXN58_RS01460 (FXN58_01455) - 279488..279718 (+) 231 Protein_284 hypothetical protein -
  FXN58_RS01465 (FXN58_01460) - 279814..280122 (-) 309 WP_005640244.1 DNA-binding transcriptional regulator -
  FXN58_RS01470 (FXN58_01465) - 280119..280457 (-) 339 WP_032995054.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FXN58_RS01475 (FXN58_01470) - 280622..280852 (-) 231 WP_262404449.1 hypothetical protein -
  FXN58_RS01485 (FXN58_01480) - 281162..281938 (-) 777 WP_148323471.1 hypothetical protein -
  FXN58_RS01490 (FXN58_01485) - 281948..282619 (-) 672 WP_005594651.1 hypothetical protein -
  FXN58_RS01495 (FXN58_01490) luxS 282808..283314 (-) 507 WP_148323473.1 S-ribosylhomocysteine lyase Regulator
  FXN58_RS01500 (FXN58_01495) - 283527..284012 (-) 486 WP_148323475.1 YqaA family protein -
  FXN58_RS01505 (FXN58_01500) - 284015..284620 (-) 606 WP_148323477.1 sugar O-acetyltransferase -
  FXN58_RS01510 (FXN58_01505) - 284620..285222 (-) 603 WP_148323479.1 beta-phosphoglucomutase family hydrolase -
  FXN58_RS01515 (FXN58_01510) - 285350..285730 (+) 381 WP_148323481.1 PRD domain-containing protein -
  FXN58_RS01530 (FXN58_01525) rep 286115..288130 (-) 2016 WP_148323483.1 DNA helicase Rep -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18961.78 Da        Isoelectric Point: 6.7533

>NTDB_id=334086 FXN58_RS01495 WP_148323473.1 282808..283314(-) (luxS) [Aggregatibacter actinomycetemcomitans strain HK_907]
MPLLDSFKVDHTRMKAPAVRIAKTMRTPKGDNITVFDLRFTIPNKENLPPKGIHTLEHLFAGFMRDHLNGKDVEIIDISP
MGCRTGFYMSLIGTPNETQIAQAWAASMQDILNVKKQSKIPELNEYQCGTYTEHSLEEAHQIAQNVLDRGIGVNKNEDLT
LDESLLKK

Nucleotide


Download         Length: 507 bp        

>NTDB_id=334086 FXN58_RS01495 WP_148323473.1 282808..283314(-) (luxS) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGCCATTACTTGATAGTTTTAAAGTGGATCACACCCGAATGAAGGCGCCTGCCGTGCGAATTGCGAAGACCATGCGCAC
TCCAAAAGGAGACAATATCACCGTTTTTGATCTTCGTTTCACGATACCTAACAAAGAAAACTTGCCACCGAAAGGTATTC
ACACCCTTGAACATTTATTTGCCGGTTTTATGCGCGATCACTTAAATGGCAAGGATGTGGAAATTATCGATATTTCCCCG
ATGGGCTGTCGCACCGGTTTTTATATGTCCTTAATCGGCACTCCAAATGAAACCCAAATCGCACAGGCGTGGGCAGCTTC
GATGCAGGATATTCTGAATGTAAAGAAACAAAGCAAAATTCCTGAACTAAATGAGTACCAATGCGGCACTTACACCGAGC
ATTCTTTGGAAGAAGCACATCAAATCGCACAAAATGTGTTGGATCGCGGTATCGGCGTAAATAAAAATGAAGATTTAACC
TTAGACGAAAGCTTATTAAAAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

100

0.732