Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FXN58_RS00870 Genome accession   NZ_CP043003
Coordinates   173796..175166 (+) Length   456 a.a.
NCBI ID   WP_148323343.1    Uniprot ID   -
Organism   Aggregatibacter actinomycetemcomitans strain HK_907     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 168796..180166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FXN58_RS00845 (FXN58_00845) - 168912..170087 (-) 1176 WP_148323336.1 Cof-type HAD-IIB family hydrolase -
  FXN58_RS00850 (FXN58_00850) manZ 170195..171031 (-) 837 WP_148323338.1 PTS mannose transporter subunit IID -
  FXN58_RS00855 (FXN58_00855) - 171045..171841 (-) 797 Protein_164 PTS mannose/fructose/sorbose transporter subunit IIC -
  FXN58_RS00860 (FXN58_00860) - 171859..172836 (-) 978 WP_148323340.1 mannose/fructose/sorbose PTS transporter subunit IIB -
  FXN58_RS00865 (FXN58_00865) rsmD 173124..173708 (-) 585 WP_148323341.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FXN58_RS00870 (FXN58_00870) pilA 173796..175166 (+) 1371 WP_148323343.1 signal recognition particle-docking protein FtsY Machinery gene
  FXN58_RS00875 (FXN58_00875) ftsE 175205..175855 (+) 651 WP_148323345.1 cell division ATP-binding protein FtsE -
  FXN58_RS00880 (FXN58_00880) ftsX 175864..176799 (+) 936 WP_148323346.1 permease-like cell division protein FtsX -
  FXN58_RS00885 (FXN58_00885) - 176907..178253 (+) 1347 WP_187386209.1 DUF4123 domain-containing protein -
  FXN58_RS00890 (FXN58_00890) - 178263..179693 (+) 1431 WP_262404444.1 toxin VasX -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50247.43 Da        Isoelectric Point: 4.2937

>NTDB_id=334080 FXN58_RS00870 WP_148323343.1 173796..175166(+) (pilA) [Aggregatibacter actinomycetemcomitans strain HK_907]
MSDEKKKGGFWSWFGLGKNKQEEPEEPQKQASQEETNQYIQESQPEVQETTEKSTALLDESNTEDVQPMPEFAEIQPEIP
QPEEIVHPVPSADMAFESNQAIETLANSTALLDEETEAQAESAVEISDESHEEDSAVADMVETREKPSEGGFFSRLLKGL
VKTKQNIGAGFRSFFLGKKIDDDLFEELEEQLLIADIGVPTTTKIINNLTQHATRQQLQNADSLYQQLKLEMGEILKPVA
QPLCIDGSKKPYVILMVGVNGVGKTTTIGKLARKFQMEGKSVMLAAGDTFRAAAVEQLQVWGERNHIPVVAQSTGSDSAS
VIFDAMQSAAARNTDILIADTAGRLQNKNNLMDELKKIVRVMKKYDESAPHEIMLTLDAGTGQNAISQAKLFHEAVGLTG
ISLTKLDGTAKGGVIFAIADQFNLPIRYIGVGEKIEDLREFNAEEFIEALFAHEEE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=334080 FXN58_RS00870 WP_148323343.1 173796..175166(+) (pilA) [Aggregatibacter actinomycetemcomitans strain HK_907]
ATGTCGGATGAAAAGAAAAAAGGCGGTTTTTGGTCTTGGTTCGGATTAGGCAAAAATAAGCAGGAAGAACCCGAAGAACC
GCAGAAACAAGCATCACAAGAAGAGACGAATCAGTACATTCAAGAATCACAACCTGAAGTGCAAGAAACGACAGAAAAAA
GCACCGCACTTTTGGATGAATCAAATACCGAAGACGTACAGCCGATGCCGGAATTTGCTGAAATTCAGCCTGAAATACCT
CAACCGGAAGAAATTGTACATCCGGTTCCATCGGCGGACATGGCGTTTGAATCCAATCAAGCCATCGAAACGCTTGCAAA
TTCGACCGCACTTTTAGACGAGGAAACGGAAGCACAAGCCGAAAGTGCGGTGGAAATTTCTGATGAATCTCACGAAGAAG
ACAGCGCCGTTGCCGACATGGTGGAAACACGGGAAAAACCAAGTGAAGGCGGCTTTTTCAGTCGCTTATTAAAAGGCTTG
GTGAAAACCAAACAAAACATCGGCGCGGGTTTTCGTAGCTTTTTCTTAGGCAAAAAAATCGATGACGACTTGTTCGAGGA
ATTGGAAGAACAGTTACTTATCGCCGACATCGGCGTGCCGACCACCACAAAAATTATCAATAATCTGACCCAACACGCCA
CCCGCCAACAGTTGCAAAATGCGGATTCGTTGTATCAACAGCTAAAACTGGAAATGGGCGAAATCCTGAAACCGGTGGCG
CAACCGTTGTGCATTGATGGAAGCAAAAAGCCTTATGTGATTTTGATGGTGGGCGTAAACGGCGTGGGCAAAACCACCAC
CATCGGCAAATTGGCGCGTAAATTCCAAATGGAAGGCAAATCCGTCATGTTGGCGGCGGGCGATACCTTCCGCGCGGCGG
CGGTGGAGCAGTTGCAGGTGTGGGGTGAACGCAACCACATTCCGGTGGTGGCGCAAAGCACCGGTTCCGATTCCGCCTCG
GTGATTTTCGATGCCATGCAATCGGCGGCGGCGCGTAATACCGACATTCTGATTGCCGACACTGCAGGGCGTCTGCAAAA
TAAAAATAACCTGATGGACGAGCTGAAAAAAATCGTGCGCGTAATGAAAAAATACGACGAAAGCGCCCCGCACGAAATCA
TGCTCACATTGGACGCCGGCACCGGTCAAAACGCCATCAGCCAAGCCAAATTATTCCATGAAGCGGTGGGCTTAACCGGC
ATCAGCCTGACCAAACTGGACGGCACCGCCAAAGGCGGCGTGATTTTCGCCATCGCCGACCAATTCAACCTGCCGATCCG
CTACATCGGCGTCGGCGAAAAAATTGAAGATTTACGCGAATTCAACGCAGAAGAATTTATTGAGGCTTTATTTGCTCATG
AGGAGGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(169-231)

SRP54-type protein, GTPase domain (SRP54)

(252-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.868

96.053

0.393