Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FWK45_RS04095 Genome accession   NZ_CP043001
Coordinates   799033..799539 (-) Length   168 a.a.
NCBI ID   WP_132995373.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-04     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 794033..804539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK45_RS04070 (FWK45_04070) tatA 795155..795376 (+) 222 WP_132995367.1 Sec-independent protein translocase subunit TatA -
  FWK45_RS04075 (FWK45_04075) tatB 795380..795934 (+) 555 WP_147590339.1 Sec-independent protein translocase protein TatB -
  FWK45_RS04080 (FWK45_04080) tatC 795931..796668 (+) 738 WP_132995369.1 twin-arginine translocase subunit TatC -
  FWK45_RS04085 (FWK45_04085) hemB 796734..797756 (+) 1023 WP_011608705.1 porphobilinogen synthase -
  FWK45_RS04090 (FWK45_04090) purT 797813..798994 (-) 1182 WP_132995371.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK45_RS04095 (FWK45_04095) luxS 799033..799539 (-) 507 WP_132995373.1 S-ribosylhomocysteine lyase Regulator
  FWK45_RS04100 (FWK45_04100) recP/tkt 799825..801831 (+) 2007 WP_132995375.1 transketolase Machinery gene
  FWK45_RS04105 (FWK45_04105) pyrG 802058..803686 (+) 1629 WP_132995377.1 glutamine hydrolyzing CTP synthase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18968.57 Da        Isoelectric Point: 5.2115

>NTDB_id=334048 FWK45_RS04095 WP_132995373.1 799033..799539(-) (luxS) [Histophilus somni strain UOC-KLM-ATR-04]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNSEQIEIIDISP
MGCRTGFYMSLIGTPNEQQVANAWSASMQDILNVKNQAEIPELNEYQCGTYTEHSLEDAHNIARNILNRGISINKNDDLL
LDDTLLNS

Nucleotide


Download         Length: 507 bp        

>NTDB_id=334048 FWK45_RS04095 WP_132995373.1 799033..799539(-) (luxS) [Histophilus somni strain UOC-KLM-ATR-04]
ATGCCACTACTTGACAGTTTTAAAGTTGATCACACAAGAATGAATGCTCCTGCTGTGCGTGTTGCAAAAACAATGCGAAC
ACCAAAAGGCGACAATATCACTGTTTTTGATCTTCGTTTTTGTATTCCTAATAAAGAAATCCTCTCTCCTAAAGGCATTC
ACACTTTAGAACACTTATTCGCAGGATTTATGCGTGATCACTTAAATAGTGAACAAATTGAAATTATTGATATTTCGCCT
ATGGGATGCCGAACCGGATTTTATATGTCATTAATTGGCACACCAAATGAACAACAAGTTGCAAACGCTTGGTCAGCTTC
AATGCAAGATATTTTAAACGTCAAAAATCAAGCCGAAATTCCTGAACTAAACGAATATCAATGTGGAACCTATACTGAAC
ATTCATTGGAAGATGCACATAATATTGCACGGAATATTCTTAATCGAGGCATAAGCATTAATAAAAATGACGATCTGCTT
TTAGATGATACTTTACTCAATTCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

74.251

99.405

0.738