Detailed information NTG0033404

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: SPT_RS09235
• Genome accession: NC_012469
• Coordinates: 1748691..1749086 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282442.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae Taiwan19F-14
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1743691..1754086

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPT_RS09210 (SPT_1850)	-	1744154..1744486 (-)	333	WP_001810556.1	helix-turn-helix transcriptional regulator	-
SPT_RS09215 (SPT_1851)	-	1744499..1745272 (-)	774	WP_000566040.1	class I SAM-dependent methyltransferase	-
SPT_RS09220 (SPT_1854)	-	1745720..1746475 (-)	756	Protein_1748	epoxyqueuosine reductase QueH	-
SPT_RS09225 (SPT_1855)	groL	1746613..1748235 (-)	1623	WP_000031573.1	chaperonin GroEL	-
SPT_RS09230 (SPT_1856)	groES	1748251..1748535 (-)	285	WP_000917339.1	co-chaperone GroES	-
SPT_RS09235 (SPT_1857)	ssbB/cilA	1748691..1749086 (-)	396	WP_000282442.1	single-stranded DNA-binding protein	Machinery gene
SPT_RS09240 (SPT_1858)	-	1749164..1749925 (-)	762	WP_001107762.1	SDR family NAD(P)-dependent oxidoreductase	-
SPT_RS09245 (SPT_1859)	ytpR	1749958..1750584 (-)	627	WP_000578309.1	YtpR family tRNA-binding protein	-
SPT_RS09250 (SPT_1860)	-	1750600..1750917 (-)	318	WP_000615767.1	thioredoxin family protein	-
SPT_RS09255 (SPT_1861)	-	1750914..1751213 (-)	300	WP_001815024.1	DUF4651 domain-containing protein	-
SPT_RS13260 (SPT_1862)	-	1751307..1751438 (+)	132	WP_001811306.1	hypothetical protein	-
SPT_RS12230 (SPT_1863)	-	1751463..1751660 (-)	198	Protein_1757	N-acetylmuramoyl-L-alanine amidase family protein	-
SPT_RS09275 (SPT_1864)	-	1751903..1752577 (-)	675	WP_000725707.1	LiaF transmembrane domain-containing protein	-
SPT_RS09280 (SPT_1865)	-	1752582..1753028 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
SPT_RS09285 (SPT_1866)	-	1753142..1753645 (-)	504	WP_000800942.1	phosphatase PAP2 family protein	-
SPT_RS09290 (SPT_1867)	-	1753642..1754004 (-)	363	WP_000078804.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14907.85 Da
• Isoelectric Point: 5.9409

>NTDB_id=33404 SPT_RS09235 WP_000282442.1 1748691..1749086(-) (ssbB/cilA) [Streptococcus pneumoniae Taiwan19F-14]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=33404 SPT_RS09235 WP_000282442.1 1748691..1749086(-) (ssbB/cilA) [Streptococcus pneumoniae Taiwan19F-14]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae D39	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae R6	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	99.237	100	0.992
ssbB/cilA	Streptococcus mitis NCTC 12261	97.71	100	0.977
ssbA	Streptococcus mutans UA159	75.573	100	0.756
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.992	100	0.71
ssbB	Lactococcus lactis subsp. cremoris KW2	60.714	85.496	0.519
ssbA	Bacillus subtilis subsp. subtilis str. 168	51.887	80.916	0.42
ssb	Latilactobacillus sakei subsp. sakei 23K	47.788	86.26	0.412
ssbB	Bacillus subtilis subsp. subtilis str. 168	44.444	82.443	0.366