Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EPT58_RS15560 Genome accession   NZ_CP035012
Coordinates   3179772..3181151 (-) Length   459 a.a.
NCBI ID   WP_128383985.1    Uniprot ID   -
Organism   Lactiplantibacillus plantarum strain 12_3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3174772..3186151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPT58_RS15545 (EPT58_15545) cysS 3175075..3176487 (-) 1413 WP_003644975.1 cysteine--tRNA ligase -
  EPT58_RS15550 (EPT58_15550) gltX 3176765..3178255 (-) 1491 WP_003640932.1 glutamate--tRNA ligase -
  EPT58_RS15555 (EPT58_15555) - 3178581..3179756 (-) 1176 WP_003640931.1 PIN/TRAM domain-containing protein -
  EPT58_RS15560 (EPT58_15560) radA 3179772..3181151 (-) 1380 WP_128383985.1 DNA repair protein RadA Machinery gene
  EPT58_RS15570 (EPT58_15570) - 3182212..3182748 (-) 537 WP_003640928.1 dUTP diphosphatase -
  EPT58_RS15575 (EPT58_15575) - 3182887..3183183 (+) 297 WP_053267374.1 GNAT family N-acetyltransferase -
  EPT58_RS15580 (EPT58_15580) rpiA 3183192..3183875 (+) 684 WP_053267375.1 ribose-5-phosphate isomerase RpiA -
  EPT58_RS15585 (EPT58_15585) - 3183951..3185282 (+) 1332 WP_053267376.1 aminopeptidase C -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 50006.24 Da        Isoelectric Point: 7.0888

>NTDB_id=333980 EPT58_RS15560 WP_128383985.1 3179772..3181151(-) (radA) [Lactiplantibacillus plantarum strain 12_3]
MAKAKTQFVCSNCGYSTPRYLGRCPNCGEWNTLTEEHFDTKPDRKSRVSFAGKSAKPQRLKEVSLTKTPRVETKLKEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAETGGSVLYVTGEESASQVKMRADRLAVSSEDFYLYPETDMSNIRST
IESTHPEFVVIDSVQTMQEPDMDSAIGSVSQIREITAELLQIAKTNGITIFIVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHTYRILRAVKNRFGSTNELGIFEMRTGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALVTPTVFGN
AKRTASGLDHNRVSLIMAVLEKRASLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSVASSYRDQQTRPSDCFVGEVGLTGE
VRRVNRIESRVGEAAKLGFKRIFIPKNNLQGWDIPTGIEVIGVATLKEALQLALQQPNY

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=333980 EPT58_RS15560 WP_128383985.1 3179772..3181151(-) (radA) [Lactiplantibacillus plantarum strain 12_3]
GTGGCAAAAGCAAAAACTCAGTTTGTTTGTTCTAACTGTGGTTATTCAACACCGCGATATTTAGGACGGTGTCCGAACTG
TGGTGAATGGAATACACTAACTGAAGAACATTTTGATACAAAACCGGACCGCAAGTCGCGGGTGAGCTTTGCGGGTAAGT
CGGCTAAGCCACAACGACTCAAAGAAGTGTCGCTGACTAAGACACCGCGTGTCGAGACTAAGCTGAAAGAGTTCAACCGG
GTCTTAGGTGGCGGTGTTGTGCCAGGTTCACTAGTTTTGATCGGTGGTGATCCAGGTATTGGTAAGTCAACGTTACTACT
GCAAGTTTCGGGGCAATTGGCCGAGACGGGTGGTTCCGTACTATACGTGACTGGTGAAGAAAGTGCCTCCCAAGTGAAGA
TGCGGGCGGACCGGCTGGCTGTTAGCAGTGAAGACTTTTATCTTTATCCTGAGACTGATATGTCGAATATTCGTTCAACG
ATTGAATCGACGCATCCAGAATTTGTGGTCATTGATTCGGTACAAACGATGCAAGAACCTGATATGGACTCTGCGATTGG
TTCAGTATCACAAATCCGTGAAATTACGGCTGAACTACTGCAAATTGCGAAGACTAACGGCATTACCATTTTTATTGTGG
GCCATGTGACTAAGGGTGGTGCCATTGCGGGGCCTAAGATCTTAGAACATATGGTTGATACCGTTTTGTACTTTGAAGGT
GATTTACATCATACGTACCGCATTTTACGGGCAGTCAAGAATCGATTCGGGTCAACGAATGAACTGGGAATATTTGAGAT
GCGGACGGGCGGTTTGTATGAAGTGGCCAATCCGTCAGAGATCTTCTTGGAAGAACGTCTGAAGGATGCTACGGGTTCCG
CCATCGTTGTTTCAATGGAAGGAACACGACCAATCTTAGTAGAAGTTCAAGCGCTGGTAACGCCAACGGTCTTTGGTAAT
GCGAAGCGGACCGCAAGTGGCTTGGATCATAATCGAGTCTCCTTGATTATGGCAGTGTTGGAAAAACGGGCGAGTCTAAT
GCTTCAGAACCAGGACGCGTATTTGAAAGCGGCCGGTGGCGTTAAGTTAGATGAACCGGCGATTGACTTAGCTATTGCGG
TCAGTGTGGCTTCTAGTTATCGTGACCAGCAGACTCGTCCGAGTGACTGTTTTGTTGGTGAAGTCGGTTTGACTGGTGAG
GTTCGGCGGGTCAACCGGATTGAATCACGAGTTGGTGAGGCGGCTAAGCTAGGTTTTAAACGTATCTTTATTCCTAAGAA
TAATCTGCAAGGTTGGGATATCCCAACTGGAATCGAAGTAATTGGAGTTGCCACGCTAAAAGAAGCGCTCCAATTAGCAT
TACAACAACCAAATTATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(66-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

67.406

98.257

0.662
  radA Streptococcus pneumoniae D39

67.406

98.257

0.662
  radA Streptococcus pneumoniae R6

67.406

98.257

0.662
  radA Streptococcus pneumoniae TIGR4

67.406

98.257

0.662
  radA Streptococcus mitis SK321

67.406

98.257

0.662
  radA Streptococcus mitis NCTC 12261

67.406

98.257

0.662
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

99.346

0.651

Multiple sequence alignment