Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FRD49_RS03495 Genome accession   NZ_CP042994
Coordinates   722340..722702 (+) Length   120 a.a.
NCBI ID   WP_002051151.1    Uniprot ID   A0AA36K978
Organism   Acinetobacter nosocomialis strain J1A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 717340..727702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS03480 (FRD49_03480) - 719831..720949 (-) 1119 WP_032010078.1 efflux RND transporter periplasmic adaptor subunit -
  FRD49_RS03485 (FRD49_03485) - 721009..721647 (-) 639 WP_032010079.1 hypothetical protein -
  FRD49_RS03490 (FRD49_03490) pilG 721930..722313 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  FRD49_RS03495 (FRD49_03495) pilH 722340..722702 (+) 363 WP_002051151.1 PleD family two-component system response regulator Machinery gene
  FRD49_RS03500 (FRD49_03500) - 722760..723296 (+) 537 WP_002051357.1 chemotaxis protein CheW -
  FRD49_RS03505 (FRD49_03505) - 723343..725424 (+) 2082 WP_004885376.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13523.49 Da        Isoelectric Point: 4.9102

>NTDB_id=333965 FRD49_RS03495 WP_002051151.1 722340..722702(+) (pilH) [Acinetobacter nosocomialis strain J1A]
MARILIVDDSPTETYRFREILTKHGYDVIEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGALDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=333965 FRD49_RS03495 WP_002051151.1 722340..722702(+) (pilH) [Acinetobacter nosocomialis strain J1A]
ATGGCACGTATTCTTATTGTTGATGACTCACCAACAGAAACTTATCGTTTTAGAGAAATTCTAACTAAGCACGGTTACGA
TGTAATTGAAGCATCTAATGGTGCAGATGGTGTAACTTTGGCAAAAGCAGAACAGCCTGACTTAGTGTTAATGGATGTTG
TAATGCCAGGTGTAAATGGCTTTCAGGCAACACGCCAGATTACCCGTGATGAAGACACTAAGCATATTCCAGTTGTTATT
GTAAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAGGGTGCTCTCGATTACTTGATTAAGCCTATTGA
AGAAAAGCAACTGATCGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K978

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392