Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   FRD49_RS01810 Genome accession   NZ_CP042994
Coordinates   383252..383716 (+) Length   154 a.a.
NCBI ID   WP_148356615.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain J1A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378252..388716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FRD49_RS01795 (FRD49_01795) - 378296..379078 (+) 783 WP_148356613.1 pilus assembly PilX N-terminal domain-containing protein -
  FRD49_RS01800 (FRD49_01800) - 379094..382768 (+) 3675 WP_148356614.1 PilC/PilY family type IV pilus protein -
  FRD49_RS01805 (FRD49_01805) comE 382782..383258 (+) 477 WP_039246155.1 type IV pilin protein Machinery gene
  FRD49_RS01810 (FRD49_01810) comF 383252..383716 (+) 465 WP_148356615.1 type IV pilin protein Machinery gene
  FRD49_RS01815 (FRD49_01815) rpsP 383864..384115 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  FRD49_RS01820 (FRD49_01820) rimM 384135..384683 (+) 549 WP_004711694.1 ribosome maturation factor RimM -
  FRD49_RS01825 (FRD49_01825) trmD 384730..385485 (+) 756 WP_002051760.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FRD49_RS01830 (FRD49_01830) rplS 385701..386069 (+) 369 WP_002051668.1 50S ribosomal protein L19 -
  FRD49_RS01835 (FRD49_01835) - 386121..387062 (-) 942 WP_080594638.1 lipase family alpha/beta hydrolase -
  FRD49_RS01840 (FRD49_01840) - 387177..388211 (-) 1035 WP_148356616.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16890.45 Da        Isoelectric Point: 8.9643

>NTDB_id=333958 FRD49_RS01810 WP_148356615.1 383252..383716(+) (comF) [Acinetobacter nosocomialis strain J1A]
MVNKIKGFTLIELMIVVAIIAILLAIAYPSYQEYIRRTNRADMQTTLQQIAMQIQRYKIANFRVTGATSSDLNIATFYPI
QGTPLYTVNLAPVTAGALNAEAWILTATPIAHTPQSGDGHIVLNYRGERCWTKGTDINNGTACVPSATSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=333958 FRD49_RS01810 WP_148356615.1 383252..383716(+) (comF) [Acinetobacter nosocomialis strain J1A]
GTGGTAAATAAAATAAAAGGCTTTACCTTAATTGAGCTAATGATTGTTGTAGCTATTATCGCAATTTTATTGGCGATAGC
TTACCCTTCTTATCAAGAATATATTCGTCGTACTAATCGTGCGGATATGCAAACTACGTTGCAACAGATTGCTATGCAGA
TCCAACGCTACAAAATTGCAAATTTTAGAGTAACGGGTGCAACGAGTTCTGATTTAAATATTGCCACATTTTATCCTATA
CAAGGCACACCTCTTTATACAGTCAATTTGGCTCCAGTGACAGCTGGAGCTTTAAATGCAGAAGCATGGATACTGACTGC
GACGCCGATTGCACATACTCCACAGTCAGGAGATGGGCATATTGTTTTAAATTATCGGGGTGAGCGTTGCTGGACAAAGG
GCACCGATATTAACAATGGTACGGCTTGCGTTCCTTCTGCAACATCAAATTGGGATGGTAAATAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-113)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

48.649

96.104

0.468
  pilE Acinetobacter baumannii D1279779

45.89

94.805

0.435