Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FWK58_RS02120 | Genome accession | NZ_CP042991 |
| Coordinates | 456683..458026 (+) | Length | 447 a.a. |
| NCBI ID | WP_075294325.1 | Uniprot ID | A0A9Q7E728 |
| Organism | Histophilus somni strain UOC-KLM-ATR-012 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 451683..463026
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FWK58_RS02095 (FWK58_02095) | - | 452183..452854 (-) | 672 | WP_011608565.1 | trimeric intracellular cation channel family protein | - |
| FWK58_RS02100 (FWK58_02100) | - | 453015..453602 (-) | 588 | WP_011608566.1 | thymidine kinase | - |
| FWK58_RS02105 (FWK58_02105) | tsaD | 453664..454692 (-) | 1029 | WP_011608567.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| FWK58_RS02110 (FWK58_02110) | dprA | 454928..456034 (+) | 1107 | WP_075294326.1 | DNA-processing protein DprA | Machinery gene |
| FWK58_RS02115 (FWK58_02115) | rsmD | 456017..456619 (-) | 603 | WP_011608569.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| FWK58_RS02120 (FWK58_02120) | pilA | 456683..458026 (+) | 1344 | WP_075294325.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| FWK58_RS02125 (FWK58_02125) | murJ | 458189..459760 (-) | 1572 | WP_075294324.1 | murein biosynthesis integral membrane protein MurJ | - |
| FWK58_RS02130 (FWK58_02130) | rpsT | 460038..460301 (+) | 264 | WP_011608572.1 | 30S ribosomal protein S20 | - |
| FWK58_RS02135 (FWK58_02135) | typA | 460363..462213 (-) | 1851 | WP_012341568.1 | translational GTPase TypA | - |
Sequence
Protein
Download Length: 447 a.a. Molecular weight: 49779.30 Da Isoelectric Point: 4.5030
>NTDB_id=333785 FWK58_RS02120 WP_075294325.1 456683..458026(+) (pilA) [Histophilus somni strain UOC-KLM-ATR-012]
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVASEQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIEIESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDKTAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQEE
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVASEQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIEIESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDKTAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQEE
Nucleotide
Download Length: 1344 bp
>NTDB_id=333785 FWK58_RS02120 WP_075294325.1 456683..458026(+) (pilA) [Histophilus somni strain UOC-KLM-ATR-012]
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGCGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAATAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTTAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATAAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGGACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAGAAGAGTAA
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGCGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAATAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTTAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATAAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGGACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAGAAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.151 |
74.049 |
0.371 |