Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FWK55_RS04690 Genome accession   NZ_CP042990
Coordinates   1052258..1053688 (+) Length   476 a.a.
NCBI ID   WP_135026440.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-011     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1047258..1058688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK55_RS09870 - 1047731..1048437 (+) 707 Protein_898 restriction endonuclease subunit S -
  FWK55_RS04680 (FWK55_04680) - 1048505..1049029 (+) 525 WP_075293869.1 transposase -
  FWK55_RS04685 (FWK55_04685) - 1049159..1052215 (+) 3057 WP_075293870.1 type I restriction endonuclease subunit R -
  FWK55_RS04690 (FWK55_04690) sbcB 1052258..1053688 (+) 1431 WP_135026440.1 exodeoxyribonuclease I Machinery gene
  FWK55_RS04695 (FWK55_04695) - 1053799..1054218 (+) 420 WP_012340506.1 hypothetical protein -
  FWK55_RS09705 - 1054444..1054668 (+) 225 WP_087469221.1 hypothetical protein -
  FWK55_RS04700 (FWK55_04700) rplY 1055229..1055516 (-) 288 WP_011609026.1 50S ribosomal protein L25 -
  FWK55_RS04705 (FWK55_04705) - 1055737..1056342 (+) 606 WP_075293872.1 DedA family protein -
  FWK55_RS04710 (FWK55_04710) rplT 1056515..1056868 (-) 354 WP_011609028.1 50S ribosomal protein L20 -
  FWK55_RS04715 (FWK55_04715) rpmI 1056939..1057136 (-) 198 WP_011609029.1 50S ribosomal protein L35 -
  FWK55_RS04720 (FWK55_04720) infC 1057235..1057777 (-) 543 WP_075293873.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 55725.40 Da        Isoelectric Point: 5.6753

>NTDB_id=333746 FWK55_RS04690 WP_135026440.1 1052258..1053688(+) (sbcB) [Histophilus somni strain UOC-KLM-ATR-011]
MQNDFSFFIYDYESFGINPATDRPAQFAGIRTDQDFNIIGEPVMFYCKQTDDYLPSPESVLVTGITPQICNEKGIPEPEF
AEKILAEFSQPNTCIMGYNNVRYDDEMTRYTFYRNFIDPYEYSWKNGNSRWDLIDVVRACYALRPDGINWAYDDDGMPSF
RLEKLTQVNDIEHGNAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKREVEKLIDIANMKPLVHVSGMLGNYRGNTS
WVVPLAWHPINQNAVIVCDLAKDIDDLLAKSAVELRQNLYTPKVELEQHNILPVPLKLVHINKCPILAPAKTLLPENATK
LGIDREFCLQNLQKLRQSPDIRDKVIEIFHDEREVIHSDNVETELYKQFFSNNDKNNMTILRQLSPEKLNEHNLSFSDKR
ISDLLFHYRARHFYKTLDRSEQIKWQKYRQRKLEKSAVQFEESLQRLVEEYQNNPEKLLLLQQVYEYGATLLSKLY

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=333746 FWK55_RS04690 WP_135026440.1 1052258..1053688(+) (sbcB) [Histophilus somni strain UOC-KLM-ATR-011]
ATGCAAAATGATTTCAGTTTTTTTATCTACGATTACGAAAGTTTTGGGATTAATCCTGCCACTGACAGACCGGCTCAATT
CGCCGGTATTCGTACAGATCAAGATTTTAATATTATTGGCGAGCCTGTAATGTTTTATTGTAAGCAAACCGATGATTATT
TACCGTCGCCGGAATCAGTTTTGGTAACCGGTATTACACCGCAAATTTGTAATGAGAAAGGTATTCCCGAACCGGAATTC
GCAGAGAAAATTTTAGCTGAATTTAGTCAACCCAACACTTGTATTATGGGGTATAACAATGTCCGTTATGACGATGAGAT
GACACGTTATACCTTTTATCGTAACTTTATTGATCCCTATGAATACAGTTGGAAAAACGGCAATTCTCGCTGGGATTTAA
TAGATGTAGTCCGAGCTTGTTACGCTTTACGTCCGGATGGAATAAATTGGGCTTACGATGATGATGGAATGCCGAGTTTT
CGTTTGGAAAAATTAACACAAGTAAATGATATAGAGCATGGTAATGCTCACGATGCAATGGCTGACGTCTATGCCACGAT
TGCAATGGCAAAATTGATTAAACAAAAACAACCAAAACTTTTTCAATTTTTCTTTGAAAATAGAGGAAAGAGGGAAGTTG
AGAAGTTGATTGATATCGCTAATATGAAACCTTTAGTACATGTATCAGGCATGTTGGGTAATTATCGAGGTAATACCAGC
TGGGTTGTGCCATTAGCTTGGCATCCTATAAATCAGAATGCTGTTATTGTTTGTGATTTAGCAAAGGATATTGATGACTT
ATTGGCTAAAAGTGCGGTCGAATTACGTCAAAATTTGTATACACCAAAAGTTGAATTGGAACAACATAATATTTTACCTG
TACCACTTAAATTAGTGCATATTAATAAATGTCCTATTCTTGCTCCTGCAAAAACATTATTGCCGGAAAATGCAACCAAA
TTGGGAATTGATCGAGAATTCTGTTTGCAAAATTTGCAAAAACTGCGTCAATCTCCAGATATTCGAGATAAGGTCATTGA
AATTTTCCATGATGAAAGAGAAGTAATACACAGTGATAATGTAGAAACTGAATTATATAAGCAATTTTTCAGTAATAATG
ATAAAAACAATATGACGATTTTGCGTCAATTATCTCCGGAGAAATTAAACGAGCATAATTTATCTTTTTCAGATAAACGT
ATCTCGGATTTATTATTTCATTATCGAGCAAGACATTTCTATAAAACGCTTGATCGCTCTGAACAGATAAAATGGCAAAA
ATATCGCCAACGTAAACTAGAAAAAAGTGCGGTTCAATTTGAGGAAAGTTTACAACGTCTAGTAGAAGAGTATCAAAATA
ATCCTGAAAAATTATTGTTGTTACAACAAGTATATGAATATGGAGCAACTTTACTTAGTAAGCTATATTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.061

97.059

0.544

Multiple sequence alignment