Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FWK55_RS02105 Genome accession   NZ_CP042990
Coordinates   456656..457999 (+) Length   447 a.a.
NCBI ID   WP_075294325.1    Uniprot ID   A0A9Q7E728
Organism   Histophilus somni strain UOC-KLM-ATR-011     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 451656..462999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK55_RS02080 (FWK55_02080) - 452156..452827 (-) 672 WP_011608565.1 trimeric intracellular cation channel family protein -
  FWK55_RS02085 (FWK55_02085) - 452988..453575 (-) 588 WP_011608566.1 thymidine kinase -
  FWK55_RS02090 (FWK55_02090) tsaD 453637..454665 (-) 1029 WP_011608567.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  FWK55_RS02095 (FWK55_02095) dprA 454901..456007 (+) 1107 WP_075294326.1 DNA-processing protein DprA Machinery gene
  FWK55_RS02100 (FWK55_02100) rsmD 455990..456592 (-) 603 WP_011608569.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FWK55_RS02105 (FWK55_02105) pilA 456656..457999 (+) 1344 WP_075294325.1 signal recognition particle-docking protein FtsY Machinery gene
  FWK55_RS02110 (FWK55_02110) murJ 458162..459733 (-) 1572 WP_075294324.1 murein biosynthesis integral membrane protein MurJ -
  FWK55_RS02115 (FWK55_02115) rpsT 460011..460274 (+) 264 WP_011608572.1 30S ribosomal protein S20 -
  FWK55_RS02120 (FWK55_02120) typA 460336..462186 (-) 1851 WP_012341568.1 translational GTPase TypA -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49779.30 Da        Isoelectric Point: 4.5030

>NTDB_id=333729 FWK55_RS02105 WP_075294325.1 456656..457999(+) (pilA) [Histophilus somni strain UOC-KLM-ATR-011]
MSEEKKKGRFWSWLGLGQKTEDPISEQQPEQQSGQQESVASEQESTSNIEQVIKEPEHIDDTSSDLVLSAHLQEQEVKEY
SLHERELSQNTVIEIESAVEKTDIFIEEDTTYQAINKEQREETTITSVKEVIPQEQEKPAENGFFSRLVKGLLKTKQNIG
IGFRSLFLGKKIDDELFEELEEQLLIADIGVPTTTKIINNLIQHASRKQLQEADLLYQQLKVELADILKPVEQPLQLDNS
KKPYVILMVGVNGVGKTTTIGKLANQFQRQGKSVMLAAGDTFRAAAVEQLQVWGERNQIPVIAQSTGSDSASVIFDAMQS
AVARNIDVLIADTAGRLQNKNNLMDELKKIVRVIKKCDKTAPHEIMLTLDSGTGQNAISQAKLFNEAVGLTGISLTKLDG
TAKGGVIFAIADQFNLPIRYIGVGEKIDDLRPFQADEFIDALFVQEE

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=333729 FWK55_RS02105 WP_075294325.1 456656..457999(+) (pilA) [Histophilus somni strain UOC-KLM-ATR-011]
ATGTCAGAAGAAAAGAAAAAAGGTAGATTTTGGTCTTGGTTAGGATTGGGGCAGAAAACAGAAGATCCGATATCAGAACA
GCAACCGGAGCAACAATCAGGACAACAGGAAAGTGTTGCAAGCGAGCAAGAATCTACTTCGAATATAGAGCAGGTTATAA
AAGAACCAGAGCATATTGATGACACTTCATCAGACTTGGTTTTATCCGCTCATTTACAGGAGCAAGAGGTAAAAGAATAC
TCACTTCATGAACGGGAACTGTCTCAAAATACTGTAATAGAAATAGAAAGTGCGGTTGAAAAAACAGATATTTTTATTGA
AGAGGATACAACATATCAGGCTATCAATAAGGAGCAGCGAGAGGAAACAACGATTACATCGGTTAAAGAAGTAATACCGC
AAGAACAAGAAAAACCGGCTGAAAATGGTTTTTTTAGTCGTTTAGTCAAAGGATTATTAAAAACCAAGCAAAATATCGGT
ATCGGTTTCCGCAGTTTGTTTTTGGGCAAGAAAATTGATGACGAGTTATTTGAGGAGTTAGAAGAACAACTATTGATCGC
TGATATCGGTGTGCCAACTACGACAAAAATCATCAATAATTTAATTCAGCATGCAAGCCGTAAACAATTGCAAGAGGCAG
ATTTACTTTATCAACAACTTAAAGTGGAATTAGCCGATATTTTAAAACCGGTCGAGCAACCTTTACAACTTGATAACAGT
AAAAAACCTTATGTTATCTTGATGGTTGGTGTAAATGGTGTGGGTAAAACCACTACAATCGGCAAATTGGCTAATCAATT
CCAAAGGCAAGGCAAATCCGTTATGTTGGCGGCAGGAGATACGTTCCGTGCTGCGGCTGTTGAGCAGCTTCAAGTTTGGG
GAGAACGTAACCAGATTCCTGTTATTGCACAAAGTACAGGTTCAGATTCTGCTTCTGTCATTTTTGATGCTATGCAATCG
GCAGTGGCACGTAATATTGATGTGCTTATTGCGGATACGGCTGGGCGTTTGCAGAATAAAAATAACCTGATGGATGAGTT
GAAAAAAATTGTTCGTGTGATAAAAAAATGTGATAAAACAGCACCGCATGAAATCATGCTAACTCTTGATAGTGGGACGG
GACAAAATGCAATTAGTCAAGCGAAATTGTTCAATGAAGCGGTAGGATTAACGGGTATTAGTCTAACCAAGTTGGATGGA
ACAGCAAAAGGCGGTGTTATTTTTGCGATTGCAGATCAATTTAATTTACCTATTCGCTATATTGGTGTCGGTGAGAAAAT
CGATGATTTACGCCCATTCCAAGCAGATGAATTTATTGACGCACTTTTTGTACAAGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(244-443)

SRP54-type protein, helical bundle domain (SRP54_N)

(163-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9Q7E728

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

50.151

74.049

0.371