Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FWK49_RS06880 Genome accession   NZ_CP042988
Coordinates   1573380..1573985 (-) Length   201 a.a.
NCBI ID   WP_012341172.1    Uniprot ID   B0UWK7
Organism   Histophilus somni strain UOC-KLM-ATR-09     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568380..1578985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK49_RS06870 (FWK49_06870) - 1569879..1571955 (+) 2077 Protein_1327 TonB-dependent receptor domain-containing protein -
  FWK49_RS06875 (FWK49_06875) tyrS 1572147..1573334 (+) 1188 WP_011609461.1 tyrosine--tRNA ligase -
  FWK49_RS06880 (FWK49_06880) recR 1573380..1573985 (-) 606 WP_012341172.1 recombination mediator RecR Machinery gene
  FWK49_RS06885 (FWK49_06885) - 1574049..1574378 (-) 330 WP_011609463.1 YbaB/EbfC family nucleoid-associated protein -
  FWK49_RS06890 (FWK49_06890) - 1574504..1576402 (+) 1899 WP_075293441.1 DNA topoisomerase III -
  FWK49_RS06895 (FWK49_06895) secG 1576540..1576884 (+) 345 WP_011609465.1 preprotein translocase subunit SecG -
  FWK49_RS06905 (FWK49_06905) secF 1577459..1578427 (-) 969 WP_075293440.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22110.25 Da        Isoelectric Point: 6.3979

>NTDB_id=333645 FWK49_RS06880 WP_012341172.1 1573380..1573985(-) (recR) [Histophilus somni strain UOC-KLM-ATR-09]
MQSSPLLENLIEHLRCLPGVGPKSAQRMAYHLLQRDRSGGMNLAGALTEAMSKIGHCTHCRTFTEEESCAICNNPRRQNS
GFLCVVEQPSDIPAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQHESFYEVILATNPTVEGEATANYIAEM
CFQHNIKVSRIAHGIPVGGELETVDGTTLSHSLIGRREIQL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=333645 FWK49_RS06880 WP_012341172.1 1573380..1573985(-) (recR) [Histophilus somni strain UOC-KLM-ATR-09]
ATGCAAAGCAGTCCTCTTTTAGAAAATCTGATTGAACATTTACGCTGTTTACCCGGCGTTGGTCCTAAATCCGCACAGCG
TATGGCATATCATTTATTGCAACGTGATCGTAGCGGTGGTATGAATTTAGCTGGTGCTTTAACCGAAGCGATGTCGAAAA
TTGGTCATTGTACTCATTGCCGCACTTTTACGGAAGAAGAGAGTTGTGCAATTTGTAATAATCCAAGACGACAAAATTCG
GGTTTTCTTTGTGTTGTGGAACAGCCTTCCGATATTCCGGCTATTGAGCAAACAGGGCAATTTTCCGGGCGATATTTTGT
GTTAATGGGACATTTATCTCCTTTAGATGGGATTGGTCCGAAAGAAATCGGTTTGGATTTATTGCAAAAGCGGTTACAAC
ATGAAAGTTTTTATGAAGTTATCTTAGCAACCAATCCAACCGTTGAAGGTGAGGCAACAGCGAATTATATTGCGGAAATG
TGTTTTCAACATAATATAAAGGTCAGCCGTATTGCTCATGGTATCCCTGTAGGAGGGGAATTGGAAACAGTTGACGGCAC
AACTTTAAGTCATTCACTTATTGGGCGTCGTGAAATTCAACTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UWK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.729

99.005

0.453
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.005

0.433

Multiple sequence alignment