NTDB

Overview

Name	radC	Type	Machinery gene
Locus tag	FWK48_RS09040	Genome accession	NZ_CP042987
Coordinates	1968389..1969057 (-)	Length	222 a.a.
NCBI ID	WP_011608296.1	Uniprot ID	B0UUW7
Organism	Histophilus somni strain UOC-KLM-ATR-08
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1963389..1974057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FWK48_RS09005 (FWK48_09005)	-	1963495..1963998 (-)	504	WP_011608302.1	chorismate lyase	-
FWK48_RS09010 (FWK48_09010)	-	1964115..1964777 (-)	663	WP_012340638.1	MOSC domain-containing protein	-
FWK48_RS09015 (FWK48_09015)	ilvM	1964843..1965061 (-)	219	WP_011608300.1	acetolactate synthase 2 small subunit	-
FWK48_RS09020 (FWK48_09020)	ilvG	1965065..1966741 (-)	1677	WP_136121457.1	acetolactate synthase 2 catalytic subunit	-
FWK48_RS09025 (FWK48_09025)	mutM	1966833..1967645 (-)	813	WP_011608298.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
FWK48_RS09030 (FWK48_09030)	rpmG	1967750..1967920 (-)	171	WP_005542835.1	50S ribosomal protein L33	-
FWK48_RS09035 (FWK48_09035)	rpmB	1967932..1968168 (-)	237	WP_011608297.1	50S ribosomal protein L28	-
FWK48_RS09040 (FWK48_09040)	radC	1968389..1969057 (-)	669	WP_011608296.1	DNA repair protein RadC	Machinery gene
FWK48_RS09045 (FWK48_09045)	coaBC	1969230..1970456 (+)	1227	WP_075319926.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
FWK48_RS09050 (FWK48_09050)	dut	1970453..1970908 (+)	456	WP_011608294.1	dUTP diphosphatase	-
FWK48_RS09055 (FWK48_09055)	slmA	1970908..1971567 (+)	660	WP_011608293.1	nucleoid occlusion factor SlmA	-
FWK48_RS09060 (FWK48_09060)	-	1971602..1971826 (+)	225	WP_012341336.1	YheU family protein	-
FWK48_RS09065 (FWK48_09065)	crp	1971839..1972483 (+)	645	WP_011608291.1	cAMP-activated global transcriptional regulator CRP	Regulator
FWK48_RS09070 (FWK48_09070)	recF	1972540..1973616 (-)	1077	WP_011608290.1	DNA replication/repair protein RecF	-

Sequence

Protein

Download Length: 222 a.a. Molecular weight: 25553.76 Da Isoelectric Point: 7.3730

                                >NTDB_id=333604 FWK48_RS09040 WP_011608296.1 1968389..1969057(-) (radC) [Histophilus somni strain UOC-KLM-ATR-08]

MTQQNTTLMPREKLLKYGASSLDDKELLAIFLRTGIKNCPVMQLSELVLAHFSSLRGLINADQKHFCQMKGLGITQFVQL

QACTEMTKRYLLQELQFAQEFTSPDTVRMYLQTELENKDREIFMVLFLDNQHRLIKKEEMFLGTINQANVYPREIIKTAL

FCNAAALILAHNHPSGVSTPSMADRKMTENIKQLSELMEIRVLDHFIIGKGNYFSFAEQGWI

Nucleotide

Download Length: 669 bp

                                >NTDB_id=333604 FWK48_RS09040 WP_011608296.1 1968389..1969057(-) (radC) [Histophilus somni strain UOC-KLM-ATR-08]

ATGACACAACAAAATACAACTTTAATGCCGAGAGAAAAACTACTGAAATATGGAGCTTCATCACTTGATGATAAGGAATT

ATTAGCGATTTTCTTACGTACAGGTATAAAAAATTGTCCTGTTATGCAACTCTCCGAGTTGGTACTTGCTCATTTTTCTT

CTTTAAGAGGATTAATTAATGCAGATCAAAAGCATTTTTGCCAAATGAAAGGATTGGGTATTACTCAATTTGTACAATTA

CAAGCCTGTACTGAAATGACCAAACGTTATCTCTTACAAGAATTACAGTTTGCACAAGAATTTACCAGCCCTGATACGGT

TCGTATGTATTTACAGACTGAATTGGAAAATAAAGATAGAGAAATTTTTATGGTACTGTTTTTGGATAATCAACATCGTT

TAATAAAAAAAGAGGAAATGTTTTTAGGTACCATTAACCAGGCAAATGTTTATCCTCGTGAGATTATTAAAACCGCACTA

TTTTGTAATGCAGCCGCACTTATTCTTGCACATAATCATCCTTCCGGTGTTTCAACGCCAAGCATGGCAGACAGAAAAAT

GACCGAGAATATAAAACAACTATCAGAATTAATGGAAATCCGTGTTTTAGATCATTTTATCATTGGTAAAGGTAACTATT

TCTCCTTTGCAGAACAAGGCTGGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(101-220)

UPF0758 N-terminal (UPF0758_N)

(8-75)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	B0UUW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radC	Haemophilus influenzae Rd KW20	64.815	97.297	0.631

Detailed information NTG0333604