Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   EO946_RS13850 Genome accession   NZ_CP034943
Coordinates   2672843..2673589 (-) Length   248 a.a.
NCBI ID   WP_003222598.1    Uniprot ID   -
Organism   Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2667843..2678589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO946_RS13825 (EO946_13825) mreC 2668250..2669122 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  EO946_RS13830 (EO946_13830) mreB 2669153..2670166 (-) 1014 WP_003222607.1 cell shape-determining protein MreB -
  EO946_RS13835 (EO946_13835) radC 2670258..2670953 (-) 696 WP_003222604.1 DNA repair protein RadC -
  EO946_RS13840 (EO946_13840) - 2670990..2671559 (-) 570 WP_003222602.1 Maf family nucleotide pyrophosphatase -
  EO946_RS13845 (EO946_13845) - 2671711..2672709 (-) 999 WP_003222600.1 SPOR domain-containing protein -
  EO946_RS13850 (EO946_13850) comC 2672843..2673589 (-) 747 WP_003222598.1 A24 family peptidase Machinery gene
  EO946_RS13855 (EO946_13855) - 2673726..2675018 (-) 1293 WP_003222596.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  EO946_RS13860 (EO946_13860) valS 2675079..2677721 (-) 2643 WP_003222594.1 valine--tRNA ligase -
  EO946_RS13865 (EO946_13865) - 2678171..2678362 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26645.26 Da        Isoelectric Point: 9.6309

>NTDB_id=333600 EO946_RS13850 WP_003222598.1 2672843..2673589(-) (comC) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
MLLILFLLGLILGSFYYTAGCRIPVHISIITPRSACSFCRRTLTAAELIPILSFLFQRGKCKSCGHRISFMYPAAELVTA
CLFAAAEIRFGSSPELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYVSLLGAAAGFLFLTLI
AAITHGGIGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAATVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYMKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=333600 EO946_RS13850 WP_003222598.1 2672843..2673589(-) (comC) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
ATGCTTCTCATTCTTTTTCTCCTCGGGCTGATTCTTGGTTCATTTTATTATACGGCCGGGTGCCGTATCCCCGTACATAT
ATCCATTATCACGCCCCGTTCGGCATGCTCGTTTTGTCGGCGGACATTAACCGCGGCAGAATTAATTCCCATCCTGTCAT
TCCTTTTCCAAAGGGGCAAATGTAAAAGCTGCGGACATAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCTGCAGAAATACGCTTTGGCTCATCTCCGGAACTATTTCCTGCTGTTGTGTTTATCTCTCTTCTCAT
CATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATCTTGATTTTCTTTCTTCCCTTTTTGGCGGCAG
CAAGATTGATTTCTCCGCTTGATTCCTGGTATGTCAGCCTGTTAGGTGCGGCCGCCGGATTTCTTTTCCTGACCTTAATT
GCCGCAATCACCCATGGAGGAATAGGGGGAGGAGATATTAAATTGTTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTGTATGGAGCGGCAACTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATGAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

91.532

100

0.915

Multiple sequence alignment