Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   FWK48_RS02335 Genome accession   NZ_CP042987
Coordinates   496604..497311 (+) Length   235 a.a.
NCBI ID   WP_136121579.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-08     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491604..502311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK48_RS02295 (FWK48_02295) - 491900..492142 (+) 243 WP_136121581.1 hypothetical protein -
  FWK48_RS02300 (FWK48_02300) - 492181..492915 (+) 735 WP_136121580.1 4'-phosphopantetheinyl transferase superfamily protein -
  FWK48_RS02310 (FWK48_02310) gltX 493254..494696 (-) 1443 WP_075320187.1 glutamate--tRNA ligase -
  FWK48_RS02330 (FWK48_02330) pilC 495387..496607 (+) 1221 WP_075321646.1 type II secretion system F family protein Machinery gene
  FWK48_RS02335 (FWK48_02335) pilD 496604..497311 (+) 708 WP_136121579.1 A24 family peptidase Machinery gene
  FWK48_RS02340 (FWK48_02340) coaE 497331..497978 (+) 648 WP_012341582.1 dephospho-CoA kinase -
  FWK48_RS02345 (FWK48_02345) yacG 497975..498169 (+) 195 WP_011608616.1 DNA gyrase inhibitor YacG -
  FWK48_RS02350 (FWK48_02350) - 498570..499946 (+) 1377 WP_012341585.1 sodium:alanine symporter family protein -
  FWK48_RS02355 (FWK48_02355) raiA 500182..500499 (+) 318 WP_132994692.1 ribosome-associated translation inhibitor RaiA -
  FWK48_RS02360 (FWK48_02360) hpt 500703..501242 (+) 540 WP_011608620.1 hypoxanthine phosphoribosyltransferase -
  FWK48_RS02365 (FWK48_02365) sodA 501370..501999 (-) 630 WP_132994691.1 superoxide dismutase [Mn] -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26997.47 Da        Isoelectric Point: 8.1958

>NTDB_id=333564 FWK48_RS02335 WP_136121579.1 496604..497311(+) (pilD) [Histophilus somni strain UOC-KLM-ATR-08]
MIYLAYMLFGGLCGLWVYLYVRQFSAQINKQVYSTFCEIFPENAPHLMPMSILRRKKCGHFSMYFLCGGLWCNICLNFPQ
NIYVGLWLACCGYLIFCLVLVDWLYQLVSQTLCQALFILGLLGAYQGISPLTLEQSLIGSLSGFSVFYLIYIVAKLFYRY
EALGRGDYWLMLGLGSFISWTKLPLLIFLACLTGLIYVVFNARDKKTIFIPFAPFLCLSTIIVYLLNFLREDILS

Nucleotide


Download         Length: 708 bp        

>NTDB_id=333564 FWK48_RS02335 WP_136121579.1 496604..497311(+) (pilD) [Histophilus somni strain UOC-KLM-ATR-08]
ATGATTTATCTGGCTTATATGTTGTTTGGTGGACTTTGTGGCTTATGGGTTTACCTTTATGTCAGGCAATTTTCTGCTCA
GATTAATAAACAAGTTTACTCGACTTTTTGCGAAATTTTCCCCGAAAATGCACCGCACTTGATGCCTATGTCTATCTTAC
GACGGAAAAAGTGCGGTCATTTTTCTATGTATTTTTTGTGTGGTGGCCTTTGGTGTAATATATGTTTAAATTTCCCACAA
AATATTTATGTTGGTTTATGGTTAGCATGTTGCGGTTATTTAATTTTTTGCCTTGTTTTAGTGGATTGGCTATACCAACT
CGTTTCACAAACCTTATGCCAAGCCCTATTTATTTTAGGGTTATTGGGTGCTTATCAAGGTATTAGCCCATTGACTTTGG
AGCAGTCTTTAATTGGTAGCTTATCAGGCTTTTCGGTTTTTTATCTTATTTACATTGTTGCAAAATTATTCTATCGTTAT
GAAGCTTTAGGACGTGGCGATTACTGGTTAATGTTAGGGTTAGGGAGCTTTATATCTTGGACAAAATTACCGTTGCTCAT
TTTTCTTGCCTGCCTCACAGGATTAATATATGTCGTTTTTAATGCAAGAGACAAAAAAACAATATTTATTCCTTTTGCCC
CATTCTTATGCCTCTCAACCATTATCGTATACTTGCTTAATTTTCTAAGGGAGGATATTCTTTCTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(94-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Haemophilus influenzae 86-028NP

39.13

97.872

0.383
  pilD Haemophilus influenzae Rd KW20

36.957

97.872

0.362

Multiple sequence alignment