Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   EO946_RS05630 Genome accession   NZ_CP034943
Coordinates   1089918..1090496 (+) Length   192 a.a.
NCBI ID   WP_003224368.1    Uniprot ID   -
Organism   Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1084918..1095496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO946_RS21255 - 1085431..1085946 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  EO946_RS21260 hemAT 1086235..1086612 (-) 378 Protein_1034 heme-based aerotactic transducer HemAT -
  EO946_RS05615 (EO946_05615) - 1086866..1088395 (-) 1530 WP_003224362.1 FAD-dependent oxidoreductase -
  EO946_RS05620 (EO946_05620) - 1088507..1089364 (+) 858 WP_003224364.1 SDR family oxidoreductase -
  EO946_RS05625 (EO946_05625) - 1089392..1089625 (-) 234 WP_003224366.1 IDEAL domain-containing protein -
  EO946_RS05630 (EO946_05630) comK 1089918..1090496 (+) 579 WP_003224368.1 competence transcription factor ComK Regulator
  EO946_RS05635 (EO946_05635) - 1090539..1091438 (-) 900 WP_003224369.1 SDR family oxidoreductase -
  EO946_RS05640 (EO946_05640) - 1091655..1091924 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  EO946_RS05645 (EO946_05645) - 1091967..1093436 (-) 1470 WP_003224375.1 sodium:solute symporter -
  EO946_RS05650 (EO946_05650) - 1093433..1093633 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  EO946_RS05655 (EO946_05655) - 1093859..1094221 (-) 363 WP_003224380.1 hypothetical protein -
  EO946_RS05660 (EO946_05660) - 1094374..1094997 (+) 624 WP_032727224.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22511.83 Da        Isoelectric Point: 8.1154

>NTDB_id=333561 EO946_RS05630 WP_003224368.1 1089918..1090496(+) (comK) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVRMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=333561 EO946_RS05630 WP_003224368.1 1089918..1090496(+) (comK) [Bacillus spizizenii ATCC 6633 = JCM 2499 strain ATCC 6633]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATCGA
CGGCAAAATTTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGGATGAAACCGCTGCAAATTGTCGACAGAA
GCTGCCGTTTTTTCGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTAACAAAAATTTCACACAAACCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGTTGC
CGATCTCCTATAATTCGTTCGAGAATCAGGTATACCGGACAGCATGGCTAAGAACTAAATTCCAAGATAGAATCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGTACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.438

100

0.984

Multiple sequence alignment