Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FWK47_RS06855 Genome accession   NZ_CP042986
Coordinates   1573370..1573975 (-) Length   201 a.a.
NCBI ID   WP_012341172.1    Uniprot ID   B0UWK7
Organism   Histophilus somni strain UOC-KLM-ATR-07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1568370..1578975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK47_RS06845 (FWK47_06845) - 1569870..1571945 (+) 2076 WP_075319832.1 TonB-dependent receptor domain-containing protein -
  FWK47_RS06850 (FWK47_06850) tyrS 1572137..1573324 (+) 1188 WP_011609461.1 tyrosine--tRNA ligase -
  FWK47_RS06855 (FWK47_06855) recR 1573370..1573975 (-) 606 WP_012341172.1 recombination mediator RecR Machinery gene
  FWK47_RS06860 (FWK47_06860) - 1574039..1574368 (-) 330 WP_011609463.1 YbaB/EbfC family nucleoid-associated protein -
  FWK47_RS06865 (FWK47_06865) - 1574494..1576392 (+) 1899 WP_075293441.1 DNA topoisomerase III -
  FWK47_RS06870 (FWK47_06870) secG 1576530..1576874 (+) 345 WP_011609465.1 preprotein translocase subunit SecG -
  FWK47_RS06880 (FWK47_06880) secF 1577449..1578417 (-) 969 WP_075293440.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22110.25 Da        Isoelectric Point: 6.3979

>NTDB_id=333534 FWK47_RS06855 WP_012341172.1 1573370..1573975(-) (recR) [Histophilus somni strain UOC-KLM-ATR-07]
MQSSPLLENLIEHLRCLPGVGPKSAQRMAYHLLQRDRSGGMNLAGALTEAMSKIGHCTHCRTFTEEESCAICNNPRRQNS
GFLCVVEQPSDIPAIEQTGQFSGRYFVLMGHLSPLDGIGPKEIGLDLLQKRLQHESFYEVILATNPTVEGEATANYIAEM
CFQHNIKVSRIAHGIPVGGELETVDGTTLSHSLIGRREIQL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=333534 FWK47_RS06855 WP_012341172.1 1573370..1573975(-) (recR) [Histophilus somni strain UOC-KLM-ATR-07]
ATGCAAAGCAGTCCTCTTTTAGAAAATCTGATTGAACATTTACGCTGTTTACCCGGCGTTGGTCCTAAATCCGCACAGCG
TATGGCATATCATTTATTGCAACGTGATCGTAGCGGTGGTATGAATTTAGCTGGTGCTTTAACCGAAGCGATGTCGAAAA
TTGGTCATTGTACTCATTGCCGCACTTTTACGGAAGAAGAGAGTTGTGCAATTTGTAATAATCCAAGACGACAAAATTCG
GGTTTTCTTTGTGTTGTGGAACAGCCTTCCGATATTCCGGCTATTGAGCAAACAGGGCAATTTTCCGGGCGATATTTTGT
GTTAATGGGACATTTATCTCCTTTAGATGGGATTGGTCCGAAAGAAATCGGTTTGGATTTATTGCAAAAGCGGTTACAAC
ATGAAAGTTTTTATGAAGTTATCTTAGCAACCAATCCAACCGTTGAAGGTGAGGCAACAGCGAATTATATTGCGGAAATG
TGTTTTCAACATAATATAAAGGTCAGCCGTATTGCTCATGGTATCCCTGTAGGAGGGGAATTGGAAACAGTTGACGGCAC
AACTTTAAGTCATTCACTTATTGGGCGTCGTGAAATTCAACTATAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0UWK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

45.729

99.005

0.453
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.719

99.005

0.433