Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EO763_RS02550 Genome accession   NZ_CP034938
Coordinates   561593..562975 (-) Length   460 a.a.
NCBI ID   WP_161527993.1    Uniprot ID   -
Organism   Pectobacterium odoriferum strain JK2.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 556593..567975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EO763_RS02520 (EO763_02560) pepP 556772..558097 (-) 1326 WP_161527990.1 Xaa-Pro aminopeptidase -
  EO763_RS02525 (EO763_02565) - 558172..558759 (-) 588 WP_010296270.1 YecA family protein -
  EO763_RS02530 (EO763_02570) zapA 558952..559281 (+) 330 WP_010284667.1 cell division protein ZapA -
  EO763_RS02540 (EO763_02580) - 559579..560226 (+) 648 WP_161527991.1 5-formyltetrahydrofolate cyclo-ligase -
  EO763_RS02545 (EO763_02585) nadR 560223..561476 (-) 1254 WP_161527992.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  EO763_RS02550 (EO763_02590) radA 561593..562975 (-) 1383 WP_161527993.1 DNA repair protein RadA Machinery gene
  EO763_RS02555 (EO763_02595) serB 562993..563970 (-) 978 WP_039493862.1 phosphoserine phosphatase -
  EO763_RS02560 (EO763_02600) - 564127..564825 (+) 699 WP_161527994.1 YtjB family periplasmic protein -
  EO763_RS02565 (EO763_02605) prfC 565034..566623 (+) 1590 WP_039493854.1 peptide chain release factor 3 -
  EO763_RS02570 (EO763_02610) osmY 567127..567735 (+) 609 WP_010296295.1 molecular chaperone OsmY -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49602.21 Da        Isoelectric Point: 7.4218

>NTDB_id=333521 EO763_RS02550 WP_161527993.1 561593..562975(-) (radA) [Pectobacterium odoriferum strain JK2.1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPAQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKIPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=333521 EO763_RS02550 WP_161527993.1 561593..562975(-) (radA) [Pectobacterium odoriferum strain JK2.1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGTAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGTCCGTGTCACGTTCTGACCGTCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCACTGCCTCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGTGTTGTTCCGGGCAGCGCCATTCTGATCGGCGGTAACCCCGGCGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGTGAAGAATCAC
TACAGCAGGTGGCAATGCGGGCACACCGCCTCAATCTGCCGGCTCAGAACCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAACTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGTGGCGTTG
CTATCGTCATGGTCGGCCATGTCACCAAAGACGGTTCGCTCGCCGGGCCGAAAGTCTTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCGATTTTCCTCAGCCGCGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAGATTCAGGCGCTGGTGGATCAA
TCGATGATGGCCAACCCGCGTCGCGTGGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTGAAAGTCACCGAAACCAGTGCCG
ACCTGGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCACAAGATCTAGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAACACGGTTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAATCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTAGCCGACGCGC
TAGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(88-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426

Multiple sequence alignment