Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FWK46_RS08220 Genome accession   NZ_CP042985
Coordinates   1829889..1830566 (-) Length   225 a.a.
NCBI ID   WP_081376624.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-06     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824889..1835566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK46_RS08205 (FWK46_08205) recC 1825421..1828855 (-) 3435 WP_075293665.1 exodeoxyribonuclease V subunit gamma -
  FWK46_RS08210 (FWK46_08210) comQ 1828908..1829225 (-) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  FWK46_RS08215 (FWK46_08215) comP 1829206..1829886 (-) 681 WP_075293666.1 DUF2572 family protein Machinery gene
  FWK46_RS08220 (FWK46_08220) comO 1829889..1830566 (-) 678 WP_081376624.1 type II secretion system protein J Machinery gene
  FWK46_RS08225 (FWK46_08225) comN 1830615..1831142 (-) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK46_RS08245 (FWK46_08245) pal 1831816..1832271 (-) 456 WP_075293668.1 peptidoglycan-associated lipoprotein Pal -
  FWK46_RS08250 (FWK46_08250) tolB 1832281..1833585 (-) 1305 WP_075293669.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK46_RS08255 (FWK46_08255) tolA 1833613..1834668 (-) 1056 WP_075293670.1 cell envelope integrity protein TolA -
  FWK46_RS08260 (FWK46_08260) tolR 1834687..1835109 (-) 423 WP_011608414.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25852.55 Da        Isoelectric Point: 8.6710

>NTDB_id=333488 FWK46_RS08220 WP_081376624.1 1829889..1830566(-) (comO) [Histophilus somni strain UOC-KLM-ATR-06]
MIALSLSMMLLMSVSAFYSYSQQQNKQILLHLYLQSELQRTIQLLGKDIRRSGFRAISDKLVRSNFDLFEQDKSGKSIVV
AQADNEPSNSCVLFIYDLDATGCVGTTYRNNVCVRNKQNTAREIERELFGYRLNKQMIETRLTYKNSISANCNQKQCQSY
LQQPACNSGGWVDLLDENDIAITALKFHWIADYNGLEVYLKGHLKRNKQVEYETSAIIPLLNQKR

Nucleotide


Download         Length: 678 bp        

>NTDB_id=333488 FWK46_RS08220 WP_081376624.1 1829889..1830566(-) (comO) [Histophilus somni strain UOC-KLM-ATR-06]
ATGATAGCGTTGAGCTTATCAATGATGTTATTAATGAGTGTTAGTGCATTTTATAGTTATAGTCAGCAACAAAATAAACA
GATACTTTTGCATCTCTATTTACAATCAGAATTGCAACGAACTATCCAACTTTTGGGTAAGGATATTCGCCGTAGTGGAT
TTAGGGCTATTAGTGATAAATTGGTTCGGAGTAATTTCGATTTATTTGAACAAGATAAAAGCGGAAAGAGTATTGTAGTC
GCTCAAGCTGATAATGAACCTTCGAATAGTTGCGTTCTTTTTATTTATGATCTTGATGCTACCGGCTGTGTAGGTACGAC
ATATCGTAATAATGTTTGTGTAAGGAATAAACAAAATACAGCTCGTGAAATTGAGCGAGAGTTATTTGGTTATCGCTTAA
ATAAACAAATGATAGAGACAAGATTAACTTATAAAAATTCAATTAGCGCGAATTGTAATCAAAAACAATGCCAAAGCTAT
TTACAACAACCTGCATGTAATAGCGGAGGGTGGGTCGATTTATTAGATGAAAATGACATAGCCATAACTGCATTAAAATT
TCATTGGATTGCTGATTACAATGGATTGGAAGTTTATCTAAAAGGGCATCTAAAGCGAAATAAACAAGTCGAATATGAGA
CTTCAGCCATTATTCCTTTGCTTAATCAAAAGAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

50.239

92.889

0.467

Multiple sequence alignment