Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FWK44_RS01470 Genome accession   NZ_CP042984
Coordinates   283080..283760 (+) Length   226 a.a.
NCBI ID   WP_132995094.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-03     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 278080..288760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK44_RS01430 (FWK44_01430) tolA 278298..279353 (+) 1056 WP_075320972.1 cell envelope integrity protein TolA -
  FWK44_RS01435 (FWK44_01435) tolB 279381..280685 (+) 1305 WP_075320971.1 Tol-Pal system beta propeller repeat protein TolB -
  FWK44_RS01440 (FWK44_01440) pal 280695..281150 (+) 456 WP_041603993.1 peptidoglycan-associated lipoprotein Pal -
  FWK44_RS01460 (FWK44_01460) comN 281824..282351 (+) 528 WP_011608418.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FWK44_RS01465 (FWK44_01465) comO 282400..283077 (+) 678 WP_011608419.1 type II secretion system protein J Machinery gene
  FWK44_RS01470 (FWK44_01470) comP 283080..283760 (+) 681 WP_132995094.1 DUF2572 family protein Machinery gene
  FWK44_RS01475 (FWK44_01475) comQ 283741..284058 (+) 318 WP_012340547.1 DUF5374 domain-containing protein Machinery gene
  FWK44_RS01480 (FWK44_01480) recC 284111..287545 (+) 3435 WP_132995096.1 exodeoxyribonuclease V subunit gamma -
  FWK44_RS01485 (FWK44_01485) ruvA 287624..288238 (+) 615 WP_075293664.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 26225.62 Da        Isoelectric Point: 9.8843

>NTDB_id=333398 FWK44_RS01470 WP_132995094.1 283080..283760(+) (comP) [Histophilus somni strain UOC-KLM-ATR-03]
MNIQKGVVTLTLLMLLSSVLLILLFFDGDLISLHSSIVSQRKIYLEQSLILQRQSISQKEKLCENQPLNNNLKSLKIEFE
SRRKIDRTSQFVWCERKYLFKKRPKKATYEARLSQYINLELLDLFQHKLHSPPAILPRDKVNYLYWVEEKSAELEIQGNI
NAVVIAEGDLKLTGKGKISGTVITGGKLSIEPAVKIVYRSKTIIDLIRSYSYWQFAENSWYDFQPL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=333398 FWK44_RS01470 WP_132995094.1 283080..283760(+) (comP) [Histophilus somni strain UOC-KLM-ATR-03]
ATGAATATACAAAAAGGAGTTGTAACGCTCACCCTATTAATGCTGTTAAGCTCAGTATTATTAATTTTACTTTTTTTTGA
TGGTGATTTGATTTCGTTGCATTCATCCATTGTTTCTCAACGGAAAATATATTTAGAACAAAGTCTTATATTACAGAGAC
AAAGTATTTCTCAAAAAGAAAAACTTTGTGAAAACCAGCCTCTGAATAATAATTTGAAAAGTTTGAAGATCGAATTTGAA
AGTCGACGAAAAATTGACCGCACTTCTCAATTTGTATGGTGTGAAAGAAAATATTTGTTTAAAAAAAGGCCGAAAAAAGC
TACTTATGAGGCAAGGCTAAGTCAGTATATAAATCTTGAGTTACTGGACTTATTTCAACATAAATTACATTCACCGCCTG
CTATTTTGCCGAGAGATAAAGTAAATTACCTCTATTGGGTTGAGGAAAAATCAGCTGAATTGGAGATACAAGGTAATATT
AATGCAGTTGTTATTGCTGAAGGGGATTTGAAGTTAACAGGAAAAGGTAAAATTAGTGGAACGGTTATTACCGGCGGGAA
ATTAAGTATTGAACCAGCAGTTAAAATTGTGTATCGCTCAAAAACAATCATCGATCTTATCCGATCATATAGTTATTGGC
AGTTTGCGGAGAATAGTTGGTATGATTTTCAACCATTATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

43.946

98.673

0.434