Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FWK44_RS00030 Genome accession   NZ_CP042984
Coordinates   4339..6213 (-) Length   624 a.a.
NCBI ID   WP_133098711.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..11213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK44_RS00010 (FWK44_00010) mioC 564..1013 (-) 450 WP_011609850.1 FMN-binding protein MioC -
  FWK44_RS00015 (FWK44_00015) zapB 1079..1297 (-) 219 WP_132995036.1 cell division protein ZapB -
  FWK44_RS00020 (FWK44_00020) gyrB 1552..3975 (+) 2424 WP_132995038.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  FWK44_RS00025 (FWK44_00025) - 4032..4259 (+) 228 WP_165942787.1 hypothetical protein -
  FWK44_RS00030 (FWK44_00030) recQ 4339..6213 (-) 1875 WP_133098711.1 DNA helicase RecQ Machinery gene
  FWK44_RS00035 (FWK44_00035) cyaY 6213..6521 (-) 309 WP_011609855.1 iron donor protein CyaY -
  FWK44_RS00040 (FWK44_00040) - 6646..6777 (+) 132 WP_075294271.1 lipoprotein -
  FWK44_RS00045 (FWK44_00045) lysA 6799..8052 (+) 1254 WP_132995044.1 diaminopimelate decarboxylase -
  FWK44_RS00050 (FWK44_00050) - 8319..9827 (+) 1509 WP_011609857.1 sodium-dependent transporter -
  FWK44_RS00055 (FWK44_00055) - 9830..9922 (+) 93 WP_041604420.1 methionine/alanine import family NSS transporter small subunit -
  FWK44_RS00060 (FWK44_00060) sxy/tfoX 10362..11012 (-) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 71055.00 Da        Isoelectric Point: 9.1843

>NTDB_id=333387 FWK44_RS00030 WP_133098711.1 4339..6213(-) (recQ) [Histophilus somni strain UOC-KLM-ATR-03]
MSVEEWKQQKSAVDFSQDSVEKSTALDILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLT
LVISPLISLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAISGKLKLLYISPEKALTTSFFHFISHCKVSFIAVDET
HCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADQATRQDILIHLKLSNPHIYIGSFDRPNIRYSLVEKFKPMEQLS
QFIAKQKGKSGIIYCNSRNKVERIAESLRQKGISAEAYHAGMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVRFV
AHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLQKVLLEKPEIPQRQIELHKLQSIGEFAESQICRRLVLLNY
FGEYQQKPCNNCDICLDPPKKYDGLVDAQKVMSAIYRVGQRFGAMYIIAVLRGSQNQKIKEYQHDKLSVFGIGKDRSREY
WQSVIRQLIHLGLIKQVIDHFNITLQLTLEALPILRGEQPLKLATPRISSITNAVIIPKRAVTNYDKDLFARLRFLRKKI
ADKENIPPYIVFNDATLQEMAQYQPITEQEMIQINGVGDIKLKRFAQPFLALIKEHQFFRTTKK

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=333387 FWK44_RS00030 WP_133098711.1 4339..6213(-) (recQ) [Histophilus somni strain UOC-KLM-ATR-03]
ATGTCAGTTGAAGAATGGAAGCAACAAAAAAGTGCGGTAGATTTTAGCCAAGATTCTGTGGAAAAATCTACCGCACTTGA
TATTTTACATTCTGTTTTTGGGTATCAGTCCTTCCGTAAAGGACAACTGGAAGTTATCGAAGCAACTTTAGCTAAAAAGG
ACAGTTTAGTTATTATGGCAACAGGTGGCGGAAAGTCCTTATGCTATCAAATTCCCGCTCTTTGTTTCTCCGGTTTAACT
TTAGTGATTTCTCCTCTAATTTCATTAATGAAAGACCAAGTAGATCAGTTATTAGCAAATGGTATAAATGCTGATTATTT
AAATTCCAGTCAAACATTTGAACAACAACAGTTGGTTCAAAATAAAGCAATATCAGGAAAATTAAAGTTGCTTTATATAT
CTCCAGAAAAAGCCTTAACAACCAGCTTTTTTCATTTTATTTCTCATTGCAAAGTCAGTTTTATTGCCGTTGATGAAACC
CATTGTATTTCACAGTGGGGACATGATTTTCGCCCAGAATATACTCAATTGGGAGGATTGAAAGCAAGTTTTCCTGATGC
TCCAATAATGGCACTAACTGCAACAGCAGATCAGGCAACCCGACAAGATATCCTTATTCATCTTAAATTATCTAATCCCC
ATATTTATATCGGTAGTTTTGATCGTCCAAATATCCGTTACTCCTTAGTTGAAAAATTTAAACCTATGGAGCAACTTTCT
CAATTTATCGCAAAACAAAAAGGGAAAAGTGGAATTATTTATTGTAACAGTCGTAATAAGGTTGAACGAATTGCAGAAAG
TCTACGCCAAAAAGGAATATCAGCTGAAGCTTATCATGCTGGCATGAGTAATGAGCAACGAGAATTTGTTCAACGTGCTT
TTCAACATGATAATGTACAAATTGTTGTTGCAACAATTGCTTTTGGAATGGGAATTAATAAATCTAACGTGCGTTTCGTC
GCTCATTTTGATCTACCTCGAAGTATCGAGGCATACTATCAGGAAACAGGACGAGCGGGGCGAGATGATTTACCAGCTGA
AGCTGTCTTATTTTACGAACCTGCAGATTACGCTTGGTTACAAAAAGTACTTTTAGAAAAACCAGAGATACCACAACGTC
AAATAGAACTACATAAATTACAATCCATAGGAGAATTTGCTGAAAGCCAAATTTGTCGGCGTTTAGTTCTATTAAATTAC
TTTGGCGAATATCAACAAAAACCTTGTAATAACTGTGATATTTGCTTAGATCCTCCGAAAAAATATGATGGATTGGTTGA
TGCACAAAAAGTAATGTCAGCAATCTATCGAGTGGGGCAACGTTTCGGGGCAATGTATATTATTGCTGTACTGCGTGGTT
CCCAAAATCAAAAAATTAAAGAATATCAACATGATAAACTAAGCGTTTTCGGCATTGGTAAAGATCGTAGTAGAGAATAT
TGGCAATCAGTTATTCGACAATTAATCCATTTAGGTCTGATAAAACAAGTAATTGACCATTTTAATATAACATTACAACT
CACATTAGAGGCATTACCTATTTTACGAGGTGAACAACCATTGAAATTAGCAACACCAAGGATATCTTCTATTACTAATG
CCGTTATTATACCCAAAAGAGCGGTCACAAATTACGATAAAGATCTCTTTGCTCGATTACGTTTTTTGCGTAAAAAAATA
GCAGACAAAGAAAATATTCCTCCTTATATAGTATTTAACGATGCAACATTACAAGAAATGGCACAATACCAACCAATAAC
AGAACAAGAAATGATACAAATTAATGGTGTCGGCGATATTAAATTAAAACGTTTTGCTCAACCCTTTCTTGCGTTAATTA
AAGAACATCAATTTTTTAGAACAACAAAAAAATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(359-416)

DEAD/DEAH box helicase (DEAD)

(41-198)

RQC domain (RQC)

(418-527)

HRDC domain (HRDC)

(547-613)

Helicase conserved C-terminal domain (Helicase_C)

(237-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.496

95.353

0.377