Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   FWK43_RS09785 Genome accession   NZ_CP042983
Coordinates   2106696..2108570 (+) Length   624 a.a.
NCBI ID   WP_132995042.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2101696..2113570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS09755 (FWK43_09755) sxy/tfoX 2101897..2102547 (+) 651 WP_012340956.1 TfoX/Sxy family DNA transformation protein Regulator
  FWK43_RS09760 (FWK43_09760) - 2102987..2103079 (-) 93 WP_041604420.1 methionine/alanine import family NSS transporter small subunit -
  FWK43_RS09765 (FWK43_09765) - 2103082..2104590 (-) 1509 WP_011609857.1 sodium-dependent transporter -
  FWK43_RS09770 (FWK43_09770) lysA 2104857..2106110 (-) 1254 WP_132995044.1 diaminopimelate decarboxylase -
  FWK43_RS09775 (FWK43_09775) - 2106132..2106263 (-) 132 WP_075294271.1 lipoprotein -
  FWK43_RS09780 (FWK43_09780) cyaY 2106388..2106696 (+) 309 WP_011609855.1 iron donor protein CyaY -
  FWK43_RS09785 (FWK43_09785) recQ 2106696..2108570 (+) 1875 WP_132995042.1 DNA helicase RecQ Machinery gene
  FWK43_RS09790 (FWK43_09790) - 2108650..2108877 (-) 228 WP_165942787.1 hypothetical protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 71042.95 Da        Isoelectric Point: 9.1843

>NTDB_id=333386 FWK43_RS09785 WP_132995042.1 2106696..2108570(+) (recQ) [Histophilus somni strain UOC-KLM-ATR-01]
MSVEEWKQQKSAVDFSQDSVEKSTALDILHSVFGYQSFRKGQLEVIEATLAKKDSLVIMATGGGKSLCYQIPALCFSGLT
LVISPLISLMKDQVDQLLANGINADYLNSSQTFEQQQLVQNKAISGKLKLLYISPEKALTTSFFHFISHCKVSFIAVDET
HCISQWGHDFRPEYTQLGGLKASFPDAPIMALTATADQATRQDILIHLKLSNPHIYIGSFDRPNIRYSLVEKFKPMEQLS
QFIAKQKGKSGIIYCNSRNKVERIAESLRQKGISAEAYHAGMSNEQREFVQRAFQHDNVQIVVATIAFGMGINKSNVRFV
AHFDLPRSIEAYYQETGRAGRDDLPAEAVLFYEPADYAWLQKVLLEKPEIPQRQIELHKLQSIGEFAESQICRRLVLLNY
FGEYQQKPCNNCDICLDPPKKYDGLVDAQKVMSAIYRVGQRFGAMYIIAVLRGSQNQKIKEYQHDKLSVFGIGKDRSREY
WQSVIRQLIHLGLIKQVIDHFNITLQLTLEALPILRGEQPLKLATPRISSITNAVTIPKRAVTNYDKDLFARLRFLRKKI
ADKENIPPYIVFNDATLQEMAQYQPITEQEMIQINGVGDIKLKRFAQPFLALIKEHQFFRTTKK

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=333386 FWK43_RS09785 WP_132995042.1 2106696..2108570(+) (recQ) [Histophilus somni strain UOC-KLM-ATR-01]
ATGTCAGTTGAAGAATGGAAGCAACAAAAAAGTGCGGTAGATTTTAGCCAAGATTCTGTGGAAAAATCTACCGCACTTGA
TATTTTACATTCTGTTTTTGGGTATCAGTCCTTCCGTAAAGGACAACTGGAAGTTATCGAAGCAACTTTAGCTAAAAAGG
ACAGTTTAGTTATTATGGCAACAGGTGGCGGAAAGTCCTTATGCTATCAAATTCCCGCTCTTTGTTTCTCCGGTTTAACT
TTAGTGATTTCTCCTCTAATTTCATTAATGAAAGACCAAGTAGATCAGTTATTAGCAAATGGTATAAATGCTGATTATTT
AAATTCCAGTCAAACATTTGAACAACAACAGTTGGTTCAAAATAAAGCAATATCAGGAAAATTAAAGTTGCTTTATATAT
CTCCAGAAAAAGCCTTAACAACCAGCTTTTTTCATTTTATTTCTCATTGCAAAGTCAGTTTTATTGCCGTTGATGAAACC
CATTGTATTTCACAGTGGGGACATGATTTTCGCCCAGAATATACTCAATTGGGAGGATTGAAAGCAAGTTTTCCTGATGC
TCCAATAATGGCACTAACTGCAACAGCAGATCAGGCAACCCGACAAGATATCCTTATTCATCTTAAATTATCTAATCCCC
ATATTTATATCGGTAGTTTTGATCGTCCAAATATCCGTTACTCCTTAGTTGAAAAATTTAAACCTATGGAGCAACTTTCT
CAATTTATCGCAAAACAAAAAGGGAAAAGTGGAATTATTTATTGTAACAGTCGTAATAAGGTTGAACGAATTGCAGAAAG
TCTACGCCAAAAAGGAATATCAGCTGAAGCTTATCATGCTGGCATGAGTAATGAGCAACGAGAATTTGTTCAACGTGCTT
TTCAACATGATAATGTACAAATTGTTGTTGCAACAATTGCTTTTGGAATGGGAATTAATAAATCTAACGTGCGTTTCGTC
GCTCATTTTGATCTACCTCGAAGTATCGAGGCATACTATCAGGAAACAGGACGAGCGGGGCGAGATGATTTACCAGCTGA
AGCTGTCTTATTTTACGAACCTGCAGATTACGCTTGGTTACAAAAAGTACTTTTAGAAAAACCAGAGATACCACAACGTC
AAATAGAACTACATAAATTACAATCCATAGGAGAATTTGCTGAAAGCCAAATTTGTCGGCGTTTAGTTCTATTAAATTAC
TTTGGCGAATATCAACAAAAACCTTGTAATAACTGTGATATTTGCTTAGATCCTCCGAAAAAATATGATGGATTGGTTGA
TGCACAAAAAGTAATGTCAGCAATCTATCGAGTGGGGCAACGTTTCGGGGCAATGTATATTATTGCTGTACTGCGTGGTT
CCCAAAATCAAAAAATTAAAGAATATCAACATGATAAACTAAGCGTTTTCGGCATTGGTAAAGATCGTAGTAGAGAATAT
TGGCAATCAGTTATTCGACAATTAATCCATTTAGGTCTGATAAAACAAGTAATTGACCATTTTAATATAACATTACAACT
CACATTAGAGGCATTACCTATTTTACGAGGTGAACAACCATTGAAATTAGCAACACCAAGGATATCTTCTATTACTAATG
CCGTTACTATACCCAAAAGAGCGGTCACAAATTACGATAAAGATCTCTTTGCTCGATTACGTTTTTTGCGTAAAAAAATA
GCAGACAAAGAAAATATTCCTCCTTATATAGTATTTAACGATGCAACATTACAAGAAATGGCACAATACCAACCAATAAC
AGAACAAGAAATGATACAAATTAATGGTGTCGGCGATATTAAATTAAAACGTTTTGCTCAACCCTTTCTTGCGTTAATTA
AAGAACATCAATTTTTTAGAACAACAAAAAAATAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(359-416)

RQC domain (RQC)

(418-527)

DEAD/DEAH box helicase (DEAD)

(41-198)

HRDC domain (HRDC)

(547-613)

Helicase conserved C-terminal domain (Helicase_C)

(237-341)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.496

95.353

0.377