Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   FWK43_RS06145 Genome accession   NZ_CP042983
Coordinates   1384404..1386410 (-) Length   668 a.a.
NCBI ID   WP_132995375.1    Uniprot ID   -
Organism   Histophilus somni strain UOC-KLM-ATR-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1379404..1391410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK43_RS09870 - 1379836..1380321 (-) 486 WP_222861259.1 restriction endonuclease subunit S -
  FWK43_RS06130 (FWK43_06130) pyrG 1380454..1380625 (-) 172 Protein_1195 CTP synthetase -
  FWK43_RS06135 (FWK43_06135) - 1380663..1382501 (+) 1839 WP_148635093.1 acyltransferase family protein -
  FWK43_RS06140 (FWK43_06140) pyrG 1382549..1384177 (-) 1629 WP_132995377.1 glutamine hydrolyzing CTP synthase -
  FWK43_RS06145 (FWK43_06145) recP/tkt 1384404..1386410 (-) 2007 WP_132995375.1 transketolase Machinery gene
  FWK43_RS06150 (FWK43_06150) luxS 1386696..1387202 (+) 507 WP_132995373.1 S-ribosylhomocysteine lyase Regulator
  FWK43_RS06155 (FWK43_06155) purT 1387241..1388422 (+) 1182 WP_132995371.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  FWK43_RS06160 (FWK43_06160) hemB 1388479..1389501 (-) 1023 WP_011608705.1 porphobilinogen synthase -
  FWK43_RS06165 (FWK43_06165) tatC 1389567..1390304 (-) 738 WP_132995369.1 twin-arginine translocase subunit TatC -
  FWK43_RS06170 (FWK43_06170) tatB 1390301..1390855 (-) 555 WP_147611140.1 Sec-independent protein translocase protein TatB -
  FWK43_RS06175 (FWK43_06175) tatA 1390859..1391080 (-) 222 WP_132995367.1 Sec-independent protein translocase subunit TatA -

Sequence

Protein


Download         Length: 668 a.a.        Molecular weight: 73386.14 Da        Isoelectric Point: 5.9966

>NTDB_id=333358 FWK43_RS06145 WP_132995375.1 1384404..1386410(-) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-01]
MVTRKELANAIRFLSMDAVQKAKSGHPGAPMGMADIAEVLWRDFLNHNPTNPQWANRDRFVLSNGHGSMLIYSLLHLTGY
DLSIEDLKQFRQLHSKTPGHPEYGYAPGVETTTGPLGQGITNAVGMAIAEKTLAAQFNREGHEIVDHHTYVFLGDGCLME
GISHEACSLAGTLGLGKLIAFYDDNNISIDGHVDGWFTDDTQKRFEAYGWHVIPAVNGHNAEQIVGAIKQAQAEKNKPTL
IMCKTIIGYGSPNKQNTHDSHGAPLGDEEIALTRQALNWNYAPFEIPADIYAKWNAHEKGQVAENAWNEKFAAYEKAYPE
LAVEFKRRLNGELPANWATESQAFIEKLQANPASIASRKASQNAIEAYAKLLPEFLGGSADLAGSNLTLWSGSKPIRATE
NVDGNYINYGVREFGMSAIMNGIALHGGFIPYGATFLMFMEYAHNAVRMAALMKQRSLFVYTHDSIGLGEDGPTHQPVEQ
TTALRLIPNLETWRPCDQVESAIAWKAAVERQDGPSALIFTRQNLAQMNRTSEQLENVKRGGYILRACCEKGDCPDLILI
ATGSEVELAMKAAEVLDAEGVKVRVVSMPSTNVFDKQDVAYREAVLPSAVTKRVAIEAGISDFWYKYVGTNGRIVGMNSF
GESAPADQLFKLFGFTVENIVAKAKEIL

Nucleotide


Download         Length: 2007 bp        

>NTDB_id=333358 FWK43_RS06145 WP_132995375.1 1384404..1386410(-) (recP/tkt) [Histophilus somni strain UOC-KLM-ATR-01]
ATGGTAACTCGTAAAGAATTGGCAAATGCAATCCGTTTTTTAAGCATGGATGCAGTACAAAAAGCAAAATCTGGGCATCC
GGGAGCTCCGATGGGAATGGCAGATATTGCGGAAGTATTATGGCGTGATTTTTTAAACCATAATCCAACTAATCCTCAAT
GGGCAAATCGTGATCGTTTTGTGTTATCTAACGGTCATGGCTCAATGTTAATTTATAGTTTACTTCATCTCACCGGTTAC
GATCTTTCTATCGAAGATTTAAAACAATTCCGTCAATTACATTCCAAAACACCAGGACACCCTGAATATGGTTATGCACC
AGGTGTTGAAACTACAACGGGWCCRTTAGGTCAAGGGATCACCAATGCAGTCGGTATGGCGATTGCAGAAAAAACGTTAG
CCGCACAATTTAACCGAGAAGGTCATGAAATTGTCGATCATCACACTTATGTTTTTTTAGGTGATGGCTGTTTAATGGAA
GGTATTTCTCATGAGGCTTGTTCATTAGCCGGTACGTTAGGTTTGGGTAAATTGATTGCGTTCTATGATGACAATAATAT
CTCAATTGACGGTCATGTTGACGGTTGGTTTACTGATGATACACAAAAACGCTTTGAGGCTTACGGCTGGCATGTTATTC
CTGCTGTTAATGGTCATAATGCGGAACAAATTGTTGGTGCAATAAAACAAGCTCAGGCTGAGAAAAATAAACCAACTTTA
ATTATGTGTAAGACTATCATTGGTTATGGTTCTCCAAATAAGCAAAATACTCATGATAGCCATGGTGCACCTTTGGGCGA
TGAAGAAATCGCTTTAACTCGTCAAGCATTAAATTGGAATTACGCACCTTTTGAAATTCCTGCTGATATTTATGCAAAAT
GGAATGCTCACGAAAAAGGACAAGTGGCGGAAAACGCATGGAATGAAAAATTTGCCGCTTATGAGAAAGCTTATCCTGAA
TTAGCGGTTGAATTTAAACGCCGTTTAAATGGGGAATTACCGGCAAACTGGGCAACAGAAAGCCAAGCCTTTATTGAAAA
ATTACAAGCAAATCCAGCCAGCATTGCAAGTCGCAAAGCGTCACAAAATGCGATTGAAGCGTATGCAAAATTATTACCGG
AATTTTTAGGCGGGTCAGCTGATTTAGCGGGGTCAAACTTAACGTTATGGTCTGGTTCAAAACCCATTCGTGCGACAGAA
AATGTAGACGGTAATTATATTAATTATGGCGTGCGTGAATTCGGAATGTCTGCCATCATGAATGGTATTGCATTGCACGG
CGGATTTATTCCTTATGGTGCAACGTTCTTAATGTTTATGGAATATGCACATAATGCAGTGCGTATGGCAGCCTTGATGA
AACAGCGTTCATTATTTGTTTATACACATGACTCTATCGGTTTAGGAGAAGACGGCCCGACGCATCAACCTGTTGAGCAA
ACAACCGCACTTCGCTTAATTCCAAATTTAGAAACATGGCGTCCTTGTGACCAAGTGGAATCTGCAATCGCATGGAAAGC
GGCGGTTGAACGTCAAGATGGTCCAAGTGCATTAATTTTCACTCGACAAAATCTTGCTCAAATGAACCGCACTTCTGAAC
AATTGGAAAACGTGAAACGTGGCGGTTATATCTTGCGTGCATGCTGTGAAAAGGGTGATTGTCCGGATTTAATCTTGATC
GCCACTGGTTCCGAAGTGGAATTAGCGATGAAAGCAGCGGAAGTGTTAGATGCGGAAGGCGTGAAAGTTCGTGTAGTATC
AATGCCGAGTACGAATGTATTTGATAAACAAGATGTTGCGTATCGTGAGGCAGTGTTACCAAGTGCGGTAACTAAACGAG
TTGCAATTGAAGCGGGTATTTCAGATTTCTGGTACAAATATGTTGGTACCAACGGACGTATCGTTGGTATGAATAGCTTC
GGTGAATCAGCACCGGCAGATCAACTGTTTAAACTCTTTGGCTTCACTGTTGAAAATATTGTGGCAAAGGCAAAAGAGAT
TTTATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-526)

Transketolase, C-terminal domain (Transketolase_C)

(555-660)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(4-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.343

99.401

0.481