Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EOS98_RS14260 Genome accession   NZ_CP034831
Coordinates   2821431..2822036 (-) Length   201 a.a.
NCBI ID   WP_126524153.1    Uniprot ID   -
Organism   Salmonella sp. SSDFZ69     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2816431..2827036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EOS98_RS14245 (EOS98_14245) helD 2816648..2818702 (-) 2055 WP_126524152.1 DNA helicase IV -
  EOS98_RS14250 (EOS98_14250) - 2818826..2819272 (+) 447 WP_001261222.1 YccF domain-containing protein -
  EOS98_RS14255 (EOS98_14255) yccS 2819291..2821444 (+) 2154 WP_000950876.1 YccS family putative transporter -
  EOS98_RS14260 (EOS98_14260) sxy/tfoX 2821431..2822036 (-) 606 WP_126524153.1 TfoX/Sxy family DNA transformation protein Regulator
  EOS98_RS14265 (EOS98_14265) sulA 2822253..2822762 (+) 510 WP_023195822.1 SOS-induced cell division inhibitor SulA -
  EOS98_RS14270 (EOS98_14270) ompA 2823119..2824171 (+) 1053 WP_001670727.1 porin OmpA -
  EOS98_RS14275 (EOS98_14275) matP 2824243..2824695 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  EOS98_RS14280 (EOS98_14280) - 2824881..2826641 (+) 1761 WP_126524154.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23173.95 Da        Isoelectric Point: 9.0103

>NTDB_id=333296 EOS98_RS14260 WP_126524153.1 2821431..2822036(-) (sxy/tfoX) [Salmonella sp. SSDFZ69]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVNESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=333296 EOS98_RS14260 WP_126524153.1 2821431..2822036(-) (sxy/tfoX) [Salmonella sp. SSDFZ69]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGAATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.377

99.005

0.746

Multiple sequence alignment