Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CA697_RS17285 Genome accession   NZ_CP042969
Coordinates   3576318..3576923 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CFSAN061769     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3571318..3581923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA697_RS17265 (CA697_017510) aes 3571355..3572314 (+) 960 WP_000801832.1 acetyl esterase -
  CA697_RS17270 (CA697_017515) hemH 3572311..3573273 (-) 963 WP_001250097.1 ferrochelatase -
  CA697_RS17275 (CA697_017525) adk 3573509..3574153 (-) 645 WP_001220233.1 adenylate kinase -
  CA697_RS17280 (CA697_017530) htpG 3574334..3576208 (-) 1875 WP_000678208.1 molecular chaperone HtpG -
  CA697_RS17285 (CA697_017535) recR 3576318..3576923 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CA697_RS17290 (CA697_017540) ybaB 3576923..3577252 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CA697_RS17295 (CA697_017545) dnaX 3577305..3579236 (-) 1932 WP_000122018.1 DNA polymerase III subunit gamma/tau -
  CA697_RS17300 (CA697_017550) apt 3579365..3579916 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CA697_RS17305 (CA697_017555) ybaN 3580069..3580446 (-) 378 WP_001188905.1 DUF454 family protein -
  CA697_RS17310 (CA697_017560) priC 3580516..3581043 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  CA697_RS17315 (CA697_017565) rsmS 3581057..3581218 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=333221 CA697_RS17285 WP_001195025.1 3576318..3576923(-) (recR) [Escherichia coli strain CFSAN061769]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=333221 CA697_RS17285 WP_001195025.1 3576318..3576923(-) (recR) [Escherichia coli strain CFSAN061769]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443