Detailed information NTG0333129

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FVF73_RS13935
• Genome accession: NZ_CP042934
• Coordinates: 2856840..2857832 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli 042
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2851840..2862832

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FVF73_RS13915 (FVF73_13915)	otnK	2852615..2853877 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
FVF73_RS13920 (FVF73_13920)	ygbL	2853874..2854512 (+)	639	WP_001278994.1	aldolase	-
FVF73_RS13925 (FVF73_13925)	ygbM	2854517..2855293 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
FVF73_RS13930 (FVF73_13930)	ygbN	2855382..2856746 (+)	1365	WP_000104456.1	GntP family transporter	-
FVF73_RS13935 (FVF73_13935)	rpoS	2856840..2857832 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FVF73_RS13940 (FVF73_13940)	nlpD	2857895..2858989 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
FVF73_RS13945 (FVF73_13945)	pcm	2859174..2859800 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FVF73_RS13950 (FVF73_13950)	surE	2859794..2860555 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
FVF73_RS13955 (FVF73_13955)	truD	2860536..2861585 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
FVF73_RS13960 (FVF73_13960)	ispF	2861582..2862061 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FVF73_RS13965 (FVF73_13965)	ispD	2862061..2862771 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=333129 FVF73_RS13935 WP_000081550.1 2856840..2857832(-) (rpoS) [Escherichia coli 042]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=333129 FVF73_RS13935 WP_000081550.1 2856840..2857832(-) (rpoS) [Escherichia coli 042]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715