Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ELQ88_RS06050 Genome accession   NZ_CP034783
Coordinates   891050..892417 (+) Length   455 a.a.
NCBI ID   WP_064675792.1    Uniprot ID   A0A191YN28
Organism   Pseudomonas sp. MPC6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 886050..897417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELQ88_RS06025 (ELQ88_06025) - 886586..886753 (+) 168 WP_064680606.1 DUF2474 domain-containing protein -
  ELQ88_RS06030 (ELQ88_06030) - 886828..887952 (-) 1125 WP_138964160.1 class I SAM-dependent methyltransferase -
  ELQ88_RS06035 (ELQ88_06035) - 888132..888863 (-) 732 WP_138964162.1 autoinducer binding domain-containing protein -
  ELQ88_RS06040 (ELQ88_06040) - 889173..889949 (+) 777 WP_128874461.1 ferredoxin--NADP reductase -
  ELQ88_RS06045 (ELQ88_06045) mscL 889990..890406 (-) 417 WP_128874462.1 large-conductance mechanosensitive channel protein MscL -
  ELQ88_RS06050 (ELQ88_06050) radA 891050..892417 (+) 1368 WP_064675792.1 DNA repair protein RadA Machinery gene
  ELQ88_RS06060 (ELQ88_06060) - 892548..892913 (-) 366 WP_128874463.1 PilZ domain-containing protein -
  ELQ88_RS06065 (ELQ88_06065) - 893072..895138 (+) 2067 WP_128874464.1 carbon starvation CstA family protein -
  ELQ88_RS06070 (ELQ88_06070) - 895154..895351 (+) 198 WP_054616680.1 YbdD/YjiX family protein -
  ELQ88_RS06075 (ELQ88_06075) yjiA 895472..896443 (+) 972 WP_138964164.1 GTPase -
  ELQ88_RS06080 (ELQ88_06080) - 896543..897253 (-) 711 WP_138964166.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.18 Da        Isoelectric Point: 6.8987

>NTDB_id=332987 ELQ88_RS06050 WP_064675792.1 891050..892417(+) (radA) [Pseudomonas sp. MPC6]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIRTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=332987 ELQ88_RS06050 WP_064675792.1 891050..892417(+) (radA) [Pseudomonas sp. MPC6]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCAACCTTTCCCAAGTGGGCCGGCCAGTGTGGTGAGTG
CGGTGCCTGGAACACCCTGACGGAAACCATGGTCGAGAGCGGCGGCGCCGCAGCTCCCAGCGGTCGCACCGGCTGGACCG
GGCAGCAGGCGCAGATCAGGACCCTGGCCGAAGTCAGTGTCGAAGAGATCCCGCGCTTCTCCACCGCTTCCGGCGAACTT
GATCGCGTCCTGGGTGGGGGCTTGGTGGACGGTTCGGTGGTATTGATCGGTGGCGACCCCGGCATCGGTAAATCGACCAT
TTTGTTGCAGACCTTGTGCAATCTCGCCAAGAGCATGCCCGCCCTGTACGTCACCGGCGAAGAGTCCCAGCAACAAGTGG
CCATGCGCGCCCGCCGTCTGGGCTTGCCTCAGGATCAATTGCGGGTCATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGCAGGAAAAGCCCAAGGTCATGGTGATCGATTCGATTCAGACGATCTTCACGGAACAACTGCAATCGGCGCC
GGGTGGTGTTTCCCAGGTTCGCGAGAGCGCAGCGTTGCTGGTGCGTTATGCCAAGCAGAGCGGTACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCACTGGCCGGGCCGCGGGTGCTGGAACATATGGTCGACACAGTGTTGTATTTCGAA
GGCGAGTCCGATGGGCGCTTGCGTCTGCTGCGGGCGGTGAAGAACCGGTTCGGCGCGGTCAACGAGCTGGGGGTGTTCGG
CATGACCGACAAGGGCTTGAAAGAAGTGTCCAACCCGTCGGCGATTTTCCTCACCCGTGCTCAGGAAGAAGTGCCCGGCA
GTGTGGTCATGGCGACTTGGGAGGGGACCCGGCCGATGCTGGTGGAAGTCCAGGCCCTGGTGGATGACAGCCACCTGGCT
AACCCGCGTCGGGTAACGCTGGGGCTGGATCAGAATCGCCTGGCGATGTTGCTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCGACCCACGACCAGGACGTGTTCCTCAATGTGGTCGGTGGGGTGAAGGTGCTGGAAACGGCCTCCGACCTGGCGCTGA
TGGCGGCGGTCATGTCCAGTTTGCGCAATCGGCCACTGCCGCATGATTTGCTGGTGTTCGGTGAGGTGGGGCTATCGGGC
GAAGTGCGTCCGGTGCCGAGCGGCCAGGAGCGCTTGAAAGAAGCCGCCAAGCACGGCTTCAAGCGTGCCATCGTGCCCAA
GGGCAATGCGCCGAAGGAGGCTCCGCCCGGGTTGCAGATCATTGCCGTCACTCGCTTGGAACAGGCCCTCGACGCGTTGT
TCGAGTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191YN28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466

Multiple sequence alignment