Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SP70585_RS03195 Genome accession   NC_012468
Coordinates   579014..579280 (+) Length   88 a.a.
NCBI ID   WP_001844589.1    Uniprot ID   -
Organism   Streptococcus pneumoniae 70585     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 574014..584280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP70585_RS03170 (SP70585_0644) - 574227..574736 (+) 510 WP_000619950.1 N-acetyltransferase -
  SP70585_RS03175 (SP70585_0645) pheT 574813..577218 (+) 2406 WP_000961553.1 phenylalanine--tRNA ligase subunit beta -
  SP70585_RS03180 (SP70585_0646) - 577286..578287 (-) 1002 WP_000597997.1 endonuclease/exonuclease/phosphatase family protein -
  SP70585_RS03185 (SP70585_0647) - 578443..578888 (+) 446 Protein_605 transposase -
  SP70585_RS03195 (SP70585_0649) HI0659 579014..579280 (+) 267 WP_001844589.1 helix-turn-helix domain-containing protein Machinery gene
  SP70585_RS03200 (SP70585_0650) metE 579540..581789 (+) 2250 WP_000108202.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  SP70585_RS03205 (SP70585_0651) metF 581853..582719 (+) 867 WP_000089953.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9629.24 Da        Isoelectric Point: 5.1633

>NTDB_id=33297 SP70585_RS03195 WP_001844589.1 579014..579280(+) (HI0659) [Streptococcus pneumoniae 70585]
MEGCPSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVLASLGKILAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=33297 SP70585_RS03195 WP_001844589.1 579014..579280(+) (HI0659) [Streptococcus pneumoniae 70585]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAACTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGATACTAGCAGTC
GTCCGACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

59.74

87.5

0.523

Multiple sequence alignment