Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CA899_RS08870 Genome accession   NZ_CP042903
Coordinates   1894261..1895688 (-) Length   475 a.a.
NCBI ID   WP_000980610.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061761     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1889261..1900688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA899_RS08840 (CA899_008895) yeeZ 1889316..1890140 (+) 825 WP_021569430.1 SDR family oxidoreductase -
  CA899_RS08845 (CA899_008900) yeeY 1890186..1891115 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CA899_RS08850 (CA899_008905) yoeI 1891330..1891392 (+) 63 WP_010723108.1 membrane protein YoeI -
  CA899_RS08855 (CA899_008910) plaP 1891382..1892740 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CA899_RS08860 (CA899_008915) tsuA 1892919..1893977 (+) 1059 WP_083582793.1 thiosulfate utilization transporter TsuA/YeeE -
  CA899_RS08865 (CA899_008920) tsuB 1893991..1894218 (+) 228 WP_021569429.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CA899_RS08870 (CA899_008925) sbcB 1894261..1895688 (-) 1428 WP_000980610.1 exodeoxyribonuclease I Machinery gene
  CA899_RS08875 (CA899_008930) dacD 1895897..1897063 (+) 1167 WP_001442313.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CA899_RS08880 (CA899_008935) sbmC 1897182..1897655 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  CA899_RS08885 (CA899_008940) yeeA 1897854..1898912 (+) 1059 WP_001200891.1 FUSC family protein -
  CA899_RS08890 (CA899_008945) tmaR 1899084..1899413 (+) 330 WP_000450409.1 DUF496 family protein -
  CA899_RS08895 (CA899_008950) - 1899514..1899810 (-) 297 Protein_1752 EutP/PduV family microcompartment system protein -
  CA899_RS08900 (CA899_008955) - 1899789..1900148 (+) 360 WP_032160190.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4720

>NTDB_id=332966 CA899_RS08870 WP_000980610.1 1894261..1895688(-) (sbcB) [Escherichia coli strain CFSAN061761]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=332966 CA899_RS08870 WP_000980610.1 1894261..1895688(-) (sbcB) [Escherichia coli strain CFSAN061761]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581