Detailed information NTG0332953

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA899_RS05060
• Genome accession: NZ_CP042903
• Coordinates: 1084824..1085816 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFSAN061761
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1079824..1090816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA899_RS05030 (CA899_005055)	ispD	1079885..1080595 (+)	711	WP_083582846.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CA899_RS05035 (CA899_005060)	ispF	1080595..1081074 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CA899_RS05040 (CA899_005065)	truD	1081071..1082120 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CA899_RS05045 (CA899_005070)	surE	1082101..1082862 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CA899_RS05050 (CA899_005075)	pcm	1082856..1083482 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CA899_RS05055 (CA899_005080)	nlpD	1083667..1084761 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CA899_RS05060 (CA899_005085)	rpoS	1084824..1085816 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CA899_RS05065 (CA899_005090)	ygbN	1085910..1087274 (-)	1365	WP_000104441.1	GntP family transporter	-
CA899_RS05070 (CA899_005095)	ygbM	1087363..1088139 (-)	777	Protein_1004	HPr family phosphocarrier protein	-
CA899_RS05075 (CA899_005100)	ygbL	1088144..1088782 (-)	639	WP_001278994.1	aldolase	-
CA899_RS05080 (CA899_005105)	otnK	1088779..1090041 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=332953 CA899_RS05060 WP_000081550.1 1084824..1085816(+) (rpoS) [Escherichia coli strain CFSAN061761]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332953 CA899_RS05060 WP_000081550.1 1084824..1085816(+) (rpoS) [Escherichia coli strain CFSAN061761]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715