Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CA898_RS08710 Genome accession   NZ_CP042901
Coordinates   1840393..1841820 (-) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061762     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1835393..1846820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA898_RS08680 (CA898_008725) yeeZ 1835448..1836272 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CA898_RS08685 (CA898_008730) yeeY 1836318..1837247 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  CA898_RS08690 (CA898_008735) yoeI 1837462..1837524 (+) 63 WP_010723108.1 membrane protein YoeI -
  CA898_RS08695 (CA898_008740) plaP 1837514..1838872 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CA898_RS08700 (CA898_008745) tsuA 1839051..1840109 (+) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  CA898_RS08705 (CA898_008750) tsuB 1840123..1840350 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CA898_RS08710 (CA898_008755) sbcB 1840393..1841820 (-) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  CA898_RS08715 (CA898_008760) dacD 1842009..1843175 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CA898_RS08720 (CA898_008765) sbmC 1843294..1843767 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  CA898_RS08725 (CA898_008770) yeeA 1843965..1845023 (+) 1059 WP_001200891.1 FUSC family protein -
  CA898_RS08730 (CA898_008775) tmaR 1845195..1845524 (+) 330 WP_000450409.1 DUF496 family protein -
  CA898_RS08735 (CA898_008780) - 1845625..1845807 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CA898_RS08740 (CA898_008785) - 1845879..1846007 (+) 129 Protein_1715 transposase domain-containing protein -
  CA898_RS08745 (CA898_008790) - 1846296..1846388 (-) 93 Protein_1716 DUF957 domain-containing protein -
  CA898_RS08750 (CA898_008795) yeeW 1846422..1846616 (-) 195 WP_061353081.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=332887 CA898_RS08710 WP_000980612.1 1840393..1841820(-) (sbcB) [Escherichia coli strain CFSAN061762]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=332887 CA898_RS08710 WP_000980612.1 1840393..1841820(-) (sbcB) [Escherichia coli strain CFSAN061762]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583