Detailed information NTG0332872

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA898_RS04845
• Genome accession: NZ_CP042901
• Coordinates: 1009992..1010984 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CFSAN061762
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1004992..1015984

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA898_RS04815 (CA898_004825)	ispD	1005053..1005763 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CA898_RS04820 (CA898_004830)	ispF	1005763..1006242 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CA898_RS04825 (CA898_004835)	truD	1006239..1007288 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CA898_RS04830 (CA898_004840)	surE	1007269..1008030 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CA898_RS04835 (CA898_004845)	pcm	1008024..1008650 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CA898_RS04840 (CA898_004850)	nlpD	1008835..1009929 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CA898_RS04845 (CA898_004855)	rpoS	1009992..1010984 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CA898_RS04850 (CA898_004860)	ygbN	1011078..1012442 (-)	1365	WP_000104441.1	GntP family transporter	-
CA898_RS04855 (CA898_004865)	ygbM	1012531..1013307 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CA898_RS04860 (CA898_004870)	ygbL	1013312..1013950 (-)	639	WP_001278994.1	aldolase	-
CA898_RS04865 (CA898_004875)	otnK	1013947..1015209 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=332872 CA898_RS04845 WP_000081550.1 1009992..1010984(+) (rpoS) [Escherichia coli strain CFSAN061762]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=332872 CA898_RS04845 WP_000081550.1 1009992..1010984(+) (rpoS) [Escherichia coli strain CFSAN061762]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715