Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CA897_RS05435 Genome accession   NZ_CP042899
Coordinates   1142001..1142516 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain CFSAN061763     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1137001..1147516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA897_RS05390 (CA897_005450) csrA 1137816..1138001 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CA897_RS05420 (CA897_005480) yqaB 1139231..1139797 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CA897_RS05425 (CA897_005485) yqaA 1139794..1140222 (+) 429 WP_001287454.1 YqaA family protein -
  CA897_RS05430 (CA897_005490) gshA 1140295..1141851 (+) 1557 WP_001551535.1 glutamate--cysteine ligase -
  CA897_RS05435 (CA897_005495) luxS 1142001..1142516 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CA897_RS05440 (CA897_005500) emrB 1142580..1144118 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CA897_RS05445 (CA897_005505) emrA 1144135..1145307 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CA897_RS05450 (CA897_005510) emrR 1145434..1145964 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CA897_RS05455 (CA897_005515) ygaH 1146055..1146390 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CA897_RS05460 (CA897_005520) ygaZ 1146380..1147117 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=332796 CA897_RS05435 WP_001130211.1 1142001..1142516(+) (luxS) [Escherichia coli strain CFSAN061763]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332796 CA897_RS05435 WP_001130211.1 1142001..1142516(+) (luxS) [Escherichia coli strain CFSAN061763]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731