Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CA897_RS03880 Genome accession   NZ_CP042899
Coordinates   816282..817514 (-) Length   410 a.a.
NCBI ID   WP_001153641.1    Uniprot ID   -
Organism   Escherichia coli strain CFSAN061763     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 811282..822514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA897_RS03865 (CA897_003900) - 811948..813321 (+) 1374 WP_000789018.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  CA897_RS03870 (CA897_003905) - 813895..815034 (+) 1140 WP_000069818.1 hypothetical protein -
  CA897_RS03875 (CA897_003910) - 815069..816028 (+) 960 WP_000991482.1 hypothetical protein -
  CA897_RS03880 (CA897_003915) kpsS 816282..817514 (-) 1233 WP_001153641.1 capsule biosynthesis protein Regulator
  CA897_RS03885 (CA897_003920) - 817549..819576 (-) 2028 WP_000579244.1 capsular polysaccharide biosynthesis protein -
  CA897_RS03890 (CA897_003925) kdsB 819573..820313 (-) 741 WP_000030740.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CA897_RS03895 (CA897_003930) - 820323..821999 (-) 1677 WP_012767757.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 48997.65 Da        Isoelectric Point: 9.9872

>NTDB_id=332788 CA897_RS03880 WP_001153641.1 816282..817514(-) (kpsS) [Escherichia coli strain CFSAN061763]
MQDNALTILLSGKKYLLLQGPMGPFFNDVAEWLESLDRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGEMIFNKIKLD
KYFQSLSCQV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=332788 CA897_RS03880 WP_001153641.1 816282..817514(-) (kpsS) [Escherichia coli strain CFSAN061763]
ATGCAAGACAACGCACTAACCATTTTATTATCGGGTAAAAAATATCTGCTATTGCAGGGGCCAATGGGACCCTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGACCGTAACGCTGTGAATGTTGTCTTCAACGGCGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGTTGGCTGCGAGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATAACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGACCCGGATTTTTATCGTAAGTTGCCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCGTGGTATGAAGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCAATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTGTTGGTTAAGACGCAGGTTAATGGGGTTTATTATGGGGAGATGATTTTTAACAAGATAAAACTGGAT
AAATATTTTCAGAGCTTGTCGTGTCAAGTATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.646

96.585

0.383