Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CA902_RS16885 Genome accession   NZ_CP042896
Coordinates   3560569..3561174 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain CFSAN061771     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3555569..3566174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA902_RS16865 (CA902_016990) aes 3555710..3556669 (+) 960 WP_077516162.1 acetyl esterase -
  CA902_RS16870 (CA902_016995) hemH 3556666..3557628 (-) 963 WP_001250114.1 ferrochelatase -
  CA902_RS16875 (CA902_017000) adk 3557760..3558404 (-) 645 WP_001220233.1 adenylate kinase -
  CA902_RS16880 (CA902_017005) htpG 3558585..3560459 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  CA902_RS16885 (CA902_017010) recR 3560569..3561174 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CA902_RS16890 (CA902_017015) ybaB 3561174..3561503 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CA902_RS16895 (CA902_017020) dnaX 3561556..3563487 (-) 1932 WP_001682655.1 DNA polymerase III subunit gamma/tau -
  CA902_RS16900 (CA902_017025) apt 3563616..3564167 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CA902_RS16905 (CA902_017030) ybaN 3564320..3564697 (-) 378 WP_001188905.1 DUF454 family protein -
  CA902_RS16910 (CA902_017035) priC 3564767..3565294 (+) 528 WP_077516160.1 primosomal replication protein N'' -
  CA902_RS16915 (CA902_017040) rsmS 3565308..3565469 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=332744 CA902_RS16885 WP_001195025.1 3560569..3561174(-) (recR) [Escherichia coli strain CFSAN061771]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=332744 CA902_RS16885 WP_001195025.1 3560569..3561174(-) (recR) [Escherichia coli strain CFSAN061771]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAGCTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443