Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CA902_RS05515 Genome accession   NZ_CP042896
Coordinates   1154255..1154770 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain CFSAN061771     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1149255..1159770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA902_RS05470 (CA902_005535) csrA 1150133..1150318 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CA902_RS05500 (CA902_005565) yqaB 1151485..1152051 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CA902_RS05505 (CA902_005570) yqaA 1152048..1152476 (+) 429 WP_001287454.1 YqaA family protein -
  CA902_RS05510 (CA902_005575) gshA 1152549..1154105 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CA902_RS05515 (CA902_005580) luxS 1154255..1154770 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  CA902_RS05520 (CA902_005585) emrB 1154834..1156372 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  CA902_RS05525 (CA902_005590) emrA 1156389..1157561 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CA902_RS05530 (CA902_005595) emrR 1157688..1158218 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CA902_RS05535 (CA902_005600) ygaH 1158309..1158644 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CA902_RS05540 (CA902_005605) ygaZ 1158634..1159371 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=332714 CA902_RS05515 WP_001130208.1 1154255..1154770(+) (luxS) [Escherichia coli strain CFSAN061771]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=332714 CA902_RS05515 WP_001130208.1 1154255..1154770(+) (luxS) [Escherichia coli strain CFSAN061771]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737