Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ELZ96_RS13590 Genome accession   NZ_CP034705
Coordinates   2778785..2779390 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Moero strain RSE29     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773785..2784390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ96_RS13575 (ELZ96_14055) helD 2774002..2776056 (-) 2055 WP_000420500.1 DNA helicase IV -
  ELZ96_RS13580 (ELZ96_14060) - 2776180..2776626 (+) 447 WP_001261222.1 YccF domain-containing protein -
  ELZ96_RS13585 (ELZ96_14065) yccS 2776645..2778798 (+) 2154 WP_000950869.1 YccS family putative transporter -
  ELZ96_RS13590 (ELZ96_14070) sxy/tfoX 2778785..2779390 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  ELZ96_RS13595 (ELZ96_14075) sulA 2779607..2780116 (+) 510 WP_001726974.1 SOS-induced cell division inhibitor SulA -
  ELZ96_RS13600 (ELZ96_14080) ompA 2780473..2781525 (+) 1053 WP_001674965.1 porin OmpA -
  ELZ96_RS13605 (ELZ96_14085) matP 2781597..2782049 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  ELZ96_RS13610 (ELZ96_14090) - 2782235..2783995 (+) 1761 WP_397609646.1 AAA family ATPase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=332658 ELZ96_RS13590 WP_001202375.1 2778785..2779390(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Moero strain RSE29]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=332658 ELZ96_RS13590 WP_001202375.1 2778785..2779390(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Moero strain RSE29]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAGTGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATATTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751

Multiple sequence alignment